Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00655 ATGATGGAGGAAGCTCAGGGCAGTGCTAATTCCCTGCCACCTTTCCTCACCAAGACTTATGAGATGGTGGATGATCCTTCCACCAATTCCATTGTTTCCTGGAGTGCCACCAATAGGAGTTTCATTGTTTGGAACCCACCAGAGTTTTCAAGGGATTTGTTACCCAAATACTTTAAGCACGGTAACTTCTCCAGTTTCATCAGGCAGCTCAACACTTATGGCTTCAGAAAGATTGATCCTGAACAATGGGAATTTGCAAATGATGATTTTGTAAGAGGTCAACCACATCTTCTGAAGAATATCCATAGGCGCAAACCTGTTCATAGCCATTCATTGCAGAATATCCAGGGTCAAGGGGCTTCTCTGCTGACCGAATCAGAAAGGCAGAGCTTCAAGGATGAGATAGAGAAGCTTAAACATGAAAAAGAGCAACTTCTTCGGGAGTTAGAGAGGCATGAACAGGAGTGGAAAATGTACGAGGAAAAATTACAACACTCCAATGATCGTTTGGAAAAGTTGGAAAAGAAGCAAGAAAATTTGGTTTCTTCTGTTTCTCAAGTGTTGCAGAAACCTGGGATTGCCTTAAATCTCTTGCCAATGACAGGAAACATGGATAGAAAACGGAGGTTGCCCAGAAGTGGCCTCTTTAGTGATGACACTAGCATTGAAGATCATATGGAAACTTCCCAAGTATTACCTGGGGAAAATGCAGAGGGTGCCTCTATTTTCACATCAAACATGGAGCGATTGGATCTGCTTGAGTCATCCATGACGTTTTGGGATAATATTACACATGATGCTGGTGACATCTTTGTTCAAAGTCATTTGAACTTGGATTTTGATGAATCTACAAGTTGTGCAGATAGTCCAGCTATATCTTGTGTGCAGCTGGAAGTTGAAGGTCAGCCTAAGTCACCTGGAATCAACATGAATTCTGAGCCAGCTGTAGCTTCTGTTCCTGATCTTGATGCATCAAAAGAACAACCTGTGGCAACAGCCCCTGTGACTACTGGTGTTAATGACATATTCTGGGAACAATTCTTGACAGAGAATCCTGGTTCATCTGAAACACAGGAAGCACAGTCCGAAAGAAAGGATTCTGATGGCAGAAGTAATGCCAAATTTTGGTGGAACATTAGGAATGTAAATAACCCTCCAGAACAGATGGGGCATTCTTAG 1179 0.4249 MMEEAQGSANSLPPFLTKTYEMVDDPSTNSIVSWSATNRSFIVWNPPEFSRDLLPKYFKHGNFSSFIRQLNTYGFRKIDPEQWEFANDDFVRGQPHLLKNIHRRKPVHSHSLQNIQGQGASLLTESERQSFKDEIEKLKHEKEQLLRELERHEQEWKMYEEKLQHSNDRLEKLEKKQENLVSSVSQVLQKPGIALNLLPMTGNMDRKRRLPRSGLFSDDTSIEDHMETSQVLPGENAEGASIFTSNMERLDLLESSMTFWDNITHDAGDIFVQSHLNLDFDESTSCADSPAISCVQLEVEGQPKSPGINMNSEPAVASVPDLDASKEQPVATAPVTTGVNDIFWEQFLTENPGSSETQEAQSERKDSDGRSNAKFWWNIRNVNNPPEQMGHS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00655 392 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 228 IPR027725 -
Pumo2g00655 392 FunFam Heat shock transcription factor 1 8 105 - -
Pumo2g00655 392 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo2g00655 392 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo2g00655 392 MobiDBLite consensus disorder prediction 374 392 - -
Pumo2g00655 392 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo2g00655 392 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo2g00655 392 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo2g00655 392 SUPERFAMILY "Winged helix" DNA-binding domain 10 104 IPR036390 -
Pumo2g00655 392 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo2g00655 392 Gene3D - 7 105 IPR036388 -
Pumo2g00655 392 Coils Coil 128 190 - -
Pumo2g00655 392 MobiDBLite consensus disorder prediction 350 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00655 Pumo-Chr2 10245610 10247951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00655 8 391 HSF AT4G18880 53.401 1.11e-126 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo2g00655 HSF_DNA-bind 2.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00655 K09419 - gmx:100820566 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00655 2 10245610 10247951 Pumo2g00655 2 10245610 10247951 ECH