Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00645 ATGGCTGATTTGAAACATGACGTGGTTTTAAAGGTACACGGTAATGATGACATTGAAGTCACTGTGCCCCTTTTTGCAGAAGGGTGTGCCTCGGTGGTGGTGAACCTTGACAACGACAAGGTGGTCACACTTCCAGGGATTTCAATTGTTTGGGGACTCACTGTTATGGTTTTGGCTTATTCTCTTGGTCACATCTCTGGTGCTCATTTCAACCCTGCTGTCACCATTGCTCATGCTTCCACCAAAAGGTTTCCATTGAAGGAGGTACCAGCTTATATAGTAGCTCAGGTGGCTGGATCCTGTCTTGCTAGCGGAACTCTCAGACTTATTTTCAGCGGCAAGGAAAACCAGTTTGCAGGAACACTCCCAGCCGGTTCTGACTTGCAAGCTTTTGTGGTCGAATTCATAATCACTTTCTTTCTCATGTTCGTCATTTCTGGAGTTGCCACCGATAACAGAGCGATTGGTGAGTTGGCAGGGCTTGCAGTTGGGTCTACGGTACTGCTAAATGTGATGTTTGCTGGGCCAATCACAGGAGCATCAATGAATCCAGCAAGAAGCTTGGGGCCTGCGATTTTGCACCACGAGTACAGAGGAATATGGATATATATGGTGTCACCAATTCTTGGAGCTCTGGCCGGTACATGGGTCTACACTTTCATCAGATACACAAACAAGCCAGTGCGTGAGATCACCAAGAGTGCCTCTTTCCTCAAAGGTCGTGATTGA 729 0.4719 MADLKHDVVLKVHGNDDIEVTVPLFAEGCASVVVNLDNDKVVTLPGISIVWGLTVMVLAYSLGHISGAHFNPAVTIAHASTKRFPLKEVPAYIVAQVAGSCLASGTLRLIFSGKENQFAGTLPAGSDLQAFVVEFIITFFLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAILHHEYRGIWIYMVSPILGALAGTWVYTFIRYTNKPVREITKSASFLKGRD 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00645 242 PRINTS Major intrinsic protein family signature 88 107 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo2g00645 242 PRINTS Major intrinsic protein family signature 133 151 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo2g00645 242 PRINTS Major intrinsic protein family signature 201 221 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo2g00645 242 PRINTS Major intrinsic protein family signature 164 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo2g00645 242 PRINTS Major intrinsic protein family signature 51 75 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo2g00645 242 Pfam Major intrinsic protein 37 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo2g00645 242 SUPERFAMILY Aquaporin-like 21 232 IPR023271 -
Pumo2g00645 242 NCBIfam MIP family channel protein 25 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo2g00645 242 ProSitePatterns MIP family signature. 69 77 IPR022357 -
Pumo2g00645 242 PANTHER AQUAPORIN NIP2-1 24 237 IPR034294 -
Pumo2g00645 242 Gene3D Glycerol uptake facilitator protein. 20 234 IPR023271 -
Pumo2g00645 242 CDD MIP 28 221 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00645 Pumo-Chr2 10142352 10144072 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00645 27 239 Major Intrinsic Protein MIP AT5G37820 61.972 1.56e-90 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00645 K09874 - gmx:100812577 387.111