Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00627 ATGGGTTATTATAGACATGTCAAAGCAACCATCGAGAGGTACAAAAAAGCATGTTCAGATTCGTCTGGTGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGATAAACTTCGTGCACAAATTAGTAACCTGCAGAATAACAACAGGCAAGTTGAATCGCAAATGATGGGTGAGTCTTTGGGCTCTATGAGTGCCAAGGAACTCAAAAACCTGGAGACTAAATTAGAAAAAGGAATTAGTAGGATTCGTTCAAAAAAGAATGAGCTGCTATTTGCTGAAATTGAGTACATGCAGAAGAGGGAGATAGACTTGCACAACAATAACCAGCTTCTTCGAGCAAAGATAGCTGAAGGTGAGAGGAGCCACCATAACATGGCTGTGTTACCTGGAGGCTCAAACTATGACTCTATGCAGTCGTCTCAGCAGCAATTTGACTCTCGTGGCTACTTCCAAGTGACTGGATTACAACCCAATAATCAGTATGCACGGCAAGATCAGATGTCCCTTCAATTAGTGTAA 534 0.4232 MGYYRHVKATIERYKKACSDSSGAGSASEANAQFYQQEADKLRAQISNLQNNNRQVESQMMGESLGSMSAKELKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAEGERSHHNMAVLPGGSNYDSMQSSQQQFDSRGYFQVTGLQPNNQYARQDQMSLQLV 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00627 177 Coils Coil 73 93 - -
Pumo2g00627 177 Coils Coil 32 59 - -
Pumo2g00627 177 Pfam K-box region 29 120 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo2g00627 177 ProSiteProfiles K-box domain profile. 32 126 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00627 Pumo-Chr2 9876675 9881022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00627 7 177 MADS-box Gene Family AT3G58780 58.523 8.80e-61 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00627 K09264 - gmx:100790650 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00627 2 9876675 9881022 Pumo2g00627 2 9876675 9881022 ECH
Pumo6g01060 6 13948636 13954682 Pumo2g00627 2 9876675 9881022 PCT