Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00610 ATGTCACTTGGTCAGGCAACCCCATGTGTAAATGCATTTGCAGCAGGCCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAACGAAAGCCGAAAATTGATGCTTATGACACCAATGGTGTTGTCTTGGAAGACATAAAGGGAGATATTGAACTCAAGGATGTTTACTTCAAATACCCTGCAAGGCCAGATGTTCAGATCTTTTCCGGATTCTCATTCTATATTCCAAGTGGCTCAACTGCTGCTTTAGTGGGTCAAAGTGGAAGTGGGAAGTCCACTATAATCAGTTTATTAGAAAGGTTTTATGATCCTGAAGCTGGAGAAGTACTTATAGATGGTGTGAATTTGAAGAATTTTCAAGTCAGATGGATTAGAGAACAGATTGGGCTTGTTGGTCAAGAACCTATCCTGTTTACAGCTAGTATTAAAGAGAATATAGCATACGGGAAAGAAGGTGCAACAGATGAGGAGATAACAACAGCAATAACACTTGCCAATGCCAAAAAGTTCATTGATAAGCTGCCTCAGGGAATTGACACAATGGTAGGAGGGCATGGAACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAACCCAAGAATCCTTCTTCTTGATGAAGCTACTAGTGCATTGGATGCTGAGTCTGAACGTATTGTTCAAGAAGCATTAGAAAAAGTTATGTCACAGAGGACTACTGTAGTTGTTGCACATCGTTTGACAACTATTAGATATGCTGACATCATAGCAGTGGTTCATCAGGGCAAAATTGTAGAAAAAGGAACTCATGATGAGTTAATCAAGGATGCTGATGGTGCTTATTCTCAGCTTATTCGTTTACAAGAAGGAAATAAAGAAGCAGAAGGGAGCCATAAGTTAGAAGCCGACAAGTCAAATAACAACAGCTTCAACTTAGATAGTCACATGGCTAGATCTTTAACTAAGAGAACATCCTTTGCAAGATCAATAAGTCAAGGCTCAACAAGCAGTAGACACTCTCTCTCACTTGGCTTAGCTCTTCCTTATCAAATTCCTTTGCATGAGTCTGGAGAAGGAGACAATGAGGATGTTGAAAGTAGTGAAGTTGATAATAAGAAGAACCAAAAGGTTCCTATTAACCGTTTGGCCAAGTTGAACAAGCCAGAGGTTCCTGTCTTATTCCTAGGATCCATTGCTGCAGCAATACACGGTGTTACTCTCCCTATATTTGGCCTCTTGCTTTCATCAGCTATTAACACGTTTTATAAGCCTCCACATCAGCTTAGGAAAGATTCTGAGTTTTGGTCACTTCTATTTGTTGGTTTGGGGGTTGTTGCTCTGGTGGCTATACCAGTGCAAAACTACTTATTTGGGATAGCTGGTGGAAAACTTATAGAACGAATTCGTTCATTGACATTTAACAAGGTTGTGCACCAAGAAATCAGTTGGTTTGATCGTCCTTCAAACTCAAGTGGTGCAGTTAGTGCAAGGTTAGCTACTGATGCTTCAACAGTGAGAAGCCTTGTGGGTGACACCTTGGCCCTCATTGTGCAAAACATAGCAACAATCTCAGCAGGTTTAATTATAGCATTCACTGCTAATTGGATTCTGGCTTTTGTAATTCTGGCTGTGTCACCCTTGTTGCTTATACAAGGATACCTTCAGACCAAGTTTGTAAAAGGATTCAGTGCAGATGCAAAGGTGAAGTATGAAGAGGCAAGTCAGGTGGCAACTGATGCTGTTGGTAGCATTAGAACTGTTGCATCATTCTGTGCTGAGCCAAAGGTGATGGATATGTACAGGAAGAAATGTTCAGGGCCAGAAAAACAAGGTGTTCGGTTGGGGCTTGTTAGTGGTGCAGGATTAGGTTTCTCTTTTATTGCTCTATACTGCACAAATGCTTTCTGTTTCTACATTGGATCTATTCTTGTGCAACACGGGAAAGCAACTTTTGGAGAGGTTTTCAAGGTTTTCTTTGCCTTAACAATTACAGCAGTTGGTGTTTCCCAGAGTAGTGCCTTGGCTCCAGATACTAACAAGGCCAAAGATTCTGCGGTTTCAATATTTGAAATTCTTGACAGCAAACCAGCTATTGACTCCAGCAGTGACGAGGGAATAACATTGGACACACTAAAAGGTGACATTGAACTTCAACAAGTCAGCTTTTGTTACCCAACAAGGCCTAATATTCAAATTTTCAAAGACATGTGTCTAAGCATGCCAGCTGGAAAGACCGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTGATCAGCCTCTTAGAGAGATTTTACAACCCTGATTCTGGGCGTGTACTAATTGATGGAGTGGATATCAAACAGTTCAAACTAAGCTGGCTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAGCCTATTCTCTTCAATGATAGCATTCGTGCCAACATAGCTTATAGCAAAGAGGGAGGTGCCACAGAGGAAGAGATAATTGCAGCAGCACAAGCAGCAAATGCACACAAGTTCATAAGTTCTCTTCCACATGGTTATGACACCAATGTTGGAGAAAGAGGCACACAATTGTCAGGAGGACAAAAGCAGCGCATAGCCATTGCAAGAGCCATTCTGAAAGACCCCAGAATCCTTTTGCTTGATGAGGCAACTAGTGCTCTTGATGCAGAATCAGAGCGTGTGGTTCAAGACGCTCTTGATAGAGTGAGTGTGAATAGAACTACTGTTGTGGTGGCTCACCGTCTTGCAACAATTAAAGGTGCTGACATTATAGCAGTGGTGAAAAACGGGGCGATTGCTGAGAAGGGAGGACATGATGCGTTGATGAAGATTGATGGTGGAGTTTATGCTTCATTGGTAGCTCTCCATGTTAGTGCATCATAG 2877 0.4181 MSLGQATPCVNAFAAGQAAAYKMFETIKRKPKIDAYDTNGVVLEDIKGDIELKDVYFKYPARPDVQIFSGFSFYIPSGSTAALVGQSGSGKSTIISLLERFYDPEAGEVLIDGVNLKNFQVRWIREQIGLVGQEPILFTASIKENIAYGKEGATDEEITTAITLANAKKFIDKLPQGIDTMVGGHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALEKVMSQRTTVVVAHRLTTIRYADIIAVVHQGKIVEKGTHDELIKDADGAYSQLIRLQEGNKEAEGSHKLEADKSNNNSFNLDSHMARSLTKRTSFARSISQGSTSSRHSLSLGLALPYQIPLHESGEGDNEDVESSEVDNKKNQKVPINRLAKLNKPEVPVLFLGSIAAAIHGVTLPIFGLLLSSAINTFYKPPHQLRKDSEFWSLLFVGLGVVALVAIPVQNYLFGIAGGKLIERIRSLTFNKVVHQEISWFDRPSNSSGAVSARLATDASTVRSLVGDTLALIVQNIATISAGLIIAFTANWILAFVILAVSPLLLIQGYLQTKFVKGFSADAKVKYEEASQVATDAVGSIRTVASFCAEPKVMDMYRKKCSGPEKQGVRLGLVSGAGLGFSFIALYCTNAFCFYIGSILVQHGKATFGEVFKVFFALTITAVGVSQSSALAPDTNKAKDSAVSIFEILDSKPAIDSSSDEGITLDTLKGDIELQQVSFCYPTRPNIQIFKDMCLSMPAGKTVALVGESGSGKSTVISLLERFYNPDSGRVLIDGVDIKQFKLSWLRQQMGLVGQEPILFNDSIRANIAYSKEGGATEEEIIAAAQAANAHKFISSLPHGYDTNVGERGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQDALDRVSVNRTTVVVAHRLATIKGADIIAVVKNGAIAEKGGHDALMKIDGGVYASLVALHVSAS 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00610 958 Gene3D ABC transporter type 1, transmembrane domain 1 313 IPR036640 GO:0005524|GO:0016020
Pumo2g00610 958 FunFam ABC transporter B family member 1 373 681 - -
Pumo2g00610 958 Pfam ABC transporter 734 883 IPR003439 GO:0005524
Pumo2g00610 958 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 50 286 IPR003439 GO:0005524
Pumo2g00610 958 MobiDBLite consensus disorder prediction 292 312 - -
Pumo2g00610 958 Gene3D - 705 953 IPR027417 -
Pumo2g00610 958 Gene3D - 40 289 IPR027417 -
Pumo2g00610 958 SUPERFAMILY ABC transporter transmembrane region 376 699 IPR036640 GO:0005524|GO:0016020
Pumo2g00610 958 FunFam ABC transporter B family member 1 40 289 - -
Pumo2g00610 958 Pfam ABC transporter 70 217 IPR003439 GO:0005524
Pumo2g00610 958 FunFam ABC transporter B family member 1 705 955 - -
Pumo2g00610 958 SMART AAA_5 742 929 IPR003593 GO:0016887
Pumo2g00610 958 SMART AAA_5 77 263 IPR003593 GO:0016887
Pumo2g00610 958 ProSitePatterns ABC transporters family signature. 855 869 IPR017871 GO:0005524|GO:0016887
Pumo2g00610 958 Gene3D ABC transporter type 1, transmembrane domain 682 704 IPR036640 GO:0005524|GO:0016020
Pumo2g00610 958 Gene3D ABC transporter type 1, transmembrane domain 373 681 IPR036640 GO:0005524|GO:0016020
Pumo2g00610 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 288 IPR027417 -
Pumo2g00610 958 CDD ABC_6TM_Pgp_ABCB1_D2_like 383 698 - -
Pumo2g00610 958 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 394 680 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo2g00610 958 Pfam ABC transporter transmembrane region 393 666 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo2g00610 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 704 952 IPR027417 -
Pumo2g00610 958 PANTHER ABC TRANSPORTER B FAMILY 359 953 IPR039421 -
Pumo2g00610 958 CDD ABC_MTABC3_MDL1_MDL2 50 288 - -
Pumo2g00610 958 ProSitePatterns ABC transporters family signature. 189 203 IPR017871 GO:0005524|GO:0016887
Pumo2g00610 958 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 715 952 IPR003439 GO:0005524
Pumo2g00610 958 CDD ABC_MTABC3_MDL1_MDL2 715 951 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00610 Pumo-Chr2 9587786 9591638 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00610 395 957 Calmodulin-binding Proteins AT2G36910 42.504 2.32e-139 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00610 K05658 - gmx:100792531 1741.09