Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00607 ATGGCACACAACAACACAGAGGTGCCACCTTCTACGTCTTCACAACCTCATGAAAGAGACAAAGCCAACCAAAAGGTTCCCTTCTACAAGCTCTTCACTTTCGCGGATCGTCTTGACGTGACCTTGATGACCATTGGCACGATCTGTGCCATGGCTAATGGGTGGTCGCAGCCTCTCATGACCCTCATTTTAGGGAAACTTATCAACACCTTTGGCTCCGCCGATCCATCAAATACTATCAAGGAAGTTTCTAAGGGCCTTGAGACACTGGCAGGCCAGAATGGGACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAACCCAAGAATCCTTCTTCTTGATGAAGCAACAAGTGCATTGGATGCCGAGTCTGAACGTGTTGTCCAAGAAGCATTAGAACAGGCTATGTCAAAAAGGACTACTGTAGTTGTTGCACATCGTTTGACAACTATTAGAAATGCTGACACCATAGCAGTGGTTCATCAAGGCAAAATTGTGGAGCAAGGAACTCATGATGAGTTAATCAAGGATGTTGATGGTGCTTATTCTCAGCTTATTCGTCTACAAGAAGGAGCTAAGGAAGCTGAAGGTAGCTATAATTCTGAAGCAGAGAAGTCAAGTAACAGTTTTAATTTAGATAGTCACATGGCTAGATCTTCCACCCAAAGAGCAGTTTCAATAAGCAGAGGTTCATCAGGTAGACACTCCCAGTCACATAGCTTTTCTCTTTCTCATCAAAGTGGGGTACATGAATCTGGAGAAATAGCAAATGGGGATATTGAAAAAAGTGAAGTTGATACTAAGAAGCCCAGAAAGGTTTCTATAAAACGTTTGGCCTACTTAAACAAGCCTGAAATTCCTGTCTTAGTACTTGGATCCATTGCTGCAATAATACAAGGTGTTGTGTTCCCTATATTTGGCTTCTTGTTCTCCTCAGCAATAAGTATGTTCTTTGAACCTCCAGAAAAACAGCGGAAAGATTCTAAGTTCTGGGCACTTCTATATTTTGGCTTGGGTTTAGTTACTCTAGTGACTATACCAGTGCAAAATTACTTCTTTGGCATTGCTGGTGGAAAATTAATAGAAAGAATTCGTTCACTGACATTTGAAAAGGTTGTGCATCAAGAAATCAGTTGGTTTGATGATCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGGTTATCTACTGATGCTTCAACAGTGAAAAGTCTAGTAGGTGACACATTGGCCCTCATTGTGCAAAACTTATCAACCATCACAGCAGGTCTAGTTATATCATTCACGGCTAATTGGATTCTTGCTTTAATAATTCTGGCTGTGTCACCCTTGGTCCTCATGCAAGGAGTTCTTCAGATGAAGTTTCTTAAAGGATTCAGTGGAGATGCCAAGGCAAAGTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTGTTGGTAGCATCCGAACCATTGCATCATTTTGTGCTGAATCAAAGGTGATGGATATGTACAGGAAGAAATGTTTAGAGCCAGAAAAACAAGGTGTTCGGTTGGGGCTTGTGAGTGGTGCAGGATTTGGTTTCTCTTTTCTGGCTCTATACTGCACAAATGCTTTCTGTTTCTACATAGGATCTGTTCTTGTGCAACATGGGAAAGCAACTTTTCCAGAGGTTTTCAAGGTCTTCTTTTGTTTAACTATCACTGCAATTGGCATTTCCCAGACTAGTGCCTTGGCACCAGACACTAACAAAGCCAAAGATTCTACAGCTTCAATACTTAAAATTCTTGACAGTAGACCTACCATTGACTCCAGCAGCAATGAGGGTAGAACACTAGAAGCCATTAATGGTGATATTGAACTTCAACATGTCAGTTTTAATTACCCAACTAGGCCTCATATTCAAATTTTCAAAGATTTGTGTCTAAGCATTCCAGCTGGAAAGCGCATAGCCATTGCAAGAGCCATGCTGAAAGACCCCAAAATCCTTTTGCTTGATGAGGCAACTAGTGCACTTGATGCTGAGTCGGAGCGCATAGTTCAAGAGGCTCTAGATAAAGTTAGTGTGGACAGAACAACTGTAGTGGTTGCTCACCGTCTTACAACAATTAGAGGTGCTGACATCATAGCAGTAATGAAAAATGGGGCAGTTGCTGAAAGGGGAAGACATGATGCGTTGATGAAGATTCCTGATGGAGTATATGCATCATTGGGACGGATGCAGAGGGTGGTGGTGGTGACGGCAACGATGACAACGTACGAACGTAATGGCAGCGGAGGTGGTGGTGGACACACAACAACGGTCATGGCTACAGTGGTGACGACTAGTGACAATCATGGTGATGGCTGCAGTGGTGGTCATGGCTAG 2367 0.4284 MAHNNTEVPPSTSSQPHERDKANQKVPFYKLFTFADRLDVTLMTIGTICAMANGWSQPLMTLILGKLINTFGSADPSNTIKEVSKGLETLAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALEQAMSKRTTVVVAHRLTTIRNADTIAVVHQGKIVEQGTHDELIKDVDGAYSQLIRLQEGAKEAEGSYNSEAEKSSNSFNLDSHMARSSTQRAVSISRGSSGRHSQSHSFSLSHQSGVHESGEIANGDIEKSEVDTKKPRKVSIKRLAYLNKPEIPVLVLGSIAAIIQGVVFPIFGFLFSSAISMFFEPPEKQRKDSKFWALLYFGLGLVTLVTIPVQNYFFGIAGGKLIERIRSLTFEKVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNLSTITAGLVISFTANWILALIILAVSPLVLMQGVLQMKFLKGFSGDAKAKYEEASQVANDAVGSIRTIASFCAESKVMDMYRKKCLEPEKQGVRLGLVSGAGFGFSFLALYCTNAFCFYIGSVLVQHGKATFPEVFKVFFCLTITAIGISQTSALAPDTNKAKDSTASILKILDSRPTIDSSSNEGRTLEAINGDIELQHVSFNYPTRPHIQIFKDLCLSIPAGKRIAIARAMLKDPKILLLDEATSALDAESERIVQEALDKVSVDRTTVVVAHRLTTIRGADIIAVMKNGAVAERGRHDALMKIPDGVYASLGRMQRVVVVTATMTTYERNGSGGGGGHTTTVMATVVTTSDNHGDGCSGGHG 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00607 788 ProSitePatterns ABC transporters family signature. 98 112 IPR017871 GO:0005524|GO:0016887
Pumo2g00607 788 MobiDBLite consensus disorder prediction 209 259 - -
Pumo2g00607 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 197 IPR027417 -
Pumo2g00607 788 SMART AAA_5 56 172 IPR003593 GO:0016887
Pumo2g00607 788 SMART AAA_5 514 716 IPR003593 GO:0016887
Pumo2g00607 788 Gene3D - 609 650 IPR027417 -
Pumo2g00607 788 MobiDBLite consensus disorder prediction 1 17 - -
Pumo2g00607 788 Gene3D ABC transporter type 1, transmembrane domain 743 756 IPR036640 GO:0005524|GO:0016020
Pumo2g00607 788 Gene3D ABC transporter type 1, transmembrane domain 199 216 IPR036640 GO:0005524|GO:0016020
Pumo2g00607 788 Gene3D ABC transporter type 1, transmembrane domain 262 607 IPR036640 GO:0005524|GO:0016020
Pumo2g00607 788 FunFam ABC transporter B family member 1 277 585 - -
Pumo2g00607 788 MobiDBLite consensus disorder prediction 201 274 - -
Pumo2g00607 788 CDD ABC_6TM_Pgp_ABCB1_D2_like 287 602 - -
Pumo2g00607 788 Gene3D - 651 742 IPR027417 -
Pumo2g00607 788 Gene3D - 78 198 IPR027417 -
Pumo2g00607 788 Pfam ABC transporter transmembrane region 298 569 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo2g00607 788 MobiDBLite consensus disorder prediction 1 21 - -
Pumo2g00607 788 SUPERFAMILY ABC transporter transmembrane region 278 600 IPR036640 GO:0005524|GO:0016020
Pumo2g00607 788 Pfam ABC transporter 87 126 IPR003439 GO:0005524
Pumo2g00607 788 PANTHER ABC TRANSPORTER B FAMILY 13 76 IPR039421 -
Pumo2g00607 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 648 741 IPR027417 -
Pumo2g00607 788 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 488 739 IPR003439 GO:0005524
Pumo2g00607 788 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 195 IPR003439 GO:0005524
Pumo2g00607 788 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 298 584 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00607 Pumo-Chr2 9566867 9574321 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00607 1 83 Calmodulin-binding Proteins AT2G36910 36.905 5.60e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00607 K05658 - gmx:100801771 983.4