Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00601 ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCACCCCAGGAAGGGGAAAATCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTCTCTTTACCAGCAGTTGGAAGCCGGGTGGTATACTTTCCACAAGGTCACAGTGAACAGGTGGCTGTGTCGACCAACAAGGAAGTAGATGCTCATATCCCAAACTATCCAAGCTTGCCTCCTCAACTCATTTGTCAACTTCATAATATGACTATGCATGCTGATGCTGAGACTGATGAAGTGTACGCGCAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAGGCGTACCTGCCAGCGGAGTTGGGCACTCCAAGTAAACAACCAACAAATTATTTCTGCAAAACTTTGACTGCCAGTGACACAAGCACTCATGGGGGATTCTCTGTGCCTCGCCGGGCAGCTGAAAAAGTGTTTCCTCCATTGGATTTCTCTCAACAGCCTCCTGCTCAAGAATTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGGGGCCAACCCAAAAGACATCTACTTACAACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAACCAACTGCTTCTTGGCATCCGCCGTGCTAATCGACCACAAACTGTGATGCCTTCTTCAGTGTTGTCAAGTGATAGTATGCACTTGGGACTTCTTGCTGCAGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATTTTCTATAATCCACGTGCTAGCCCTTCAGAATTTGTCATACCCTTAGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGGTTCAGGATGCTGTTTGAAACAGAGGAGTCAAGTGTGCGGCGATACATGGGTACAATAACTGGCATTAGTGACCTGGATCCTGTCCGGTGGCCAAATTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACTGCTGGAGAGAGGCAACCTAGAGTGTCTCTATGGGAAATTGAGCCATTAACTACATTTCCTATGTATCCATCTCCATTCCCCCTTAGGCTTAAACGACCATGGCCTCCAGGACTGCCTTCATTCCATGCAGGCATGAAGGATGATGATTTTGGCCTGAATTCACCTCTGTTGTGGCTCCGAGACCCTGATAGAGGGCTTCAGTCTCTTAATTTTCAGGGGATTAGGGTTAATCCTTGGATGCAGCCAAGATTTGATCCCACAATGTTGAATATGCAAACAGATATGTACCAAGCTGCGGCTGCTGCCGCTGTTCAGGACATGAGGAGTTTAGATCCTTCCAAACAGCATTCTGCTTCCTTACTTCAATTTCAGCAACCACAGAACTTCCCAAATAGGACTGCTGCTTTAATACAGGCCCAGATGTTGCAGCAGCAACCTCAGCAGATTTTTGGAAATAATCAAGAGAATCAGCATTCACCACAATCTCAGCCACAAACTCAGGCTCATCTTCAGCAACATCTACAACATCAACACTCATTCAATAGTCAGCATCATCATCAGCACCAGCACCAGCACCAGCAACAACAACTGCAACAACAGACACAGCAGCAACAGCAACAGCAAGTGGTAGATAATCAGCAGATTTCCAGTGCAGTCTCTACAATGTCTCAGTTTGTTTCAGCTCCTCAACCTCAATCACCACCTATGCAAGCTATCTCTTCCCTGTGCCAACAGCAAAATTTTTCTGATTCAAATGGGAACTCTGTGACTACTATTGTTTCTCCCCTGCACAGTATCTTGGGTTCTTTTCCCCAGGATGAAACATCTCAACTCCTGAACCTTCCTAGAACAAGCTCTTGGATTCCTGTTCAAAATTCTAGTGGGTGGCCCTCAAAGCGTGTTGCAGTGGATCCTCTCCTTTCTTCTGGAGCCTCTCAATGTGTTCTACCTCAGGTGGAGCAGCCACAGAGTACTGTGTCTCAAAATTCTATTACTTTACCGCCTTTTCCTGGTAGGGAGTGCTCAATAGACCAAGAAGGGAGCAATGATCCACAAAACCATCTCTTATTTGGTGTTAATATAGAGCCCTTGTCCCTTCTCATGCCTAATGGGATGTCAAGCCTTAAGGGGGTCAGCGGCAACAATGACTCCTCAACCTTGCCATATCAATCTTCTAATTATCTGAATATTACCACAGGCACCGATTCTTCATTGAATCATGGAATGACACCCAACATAGGCGACTCGGGTTTCCTGCAGAGTCCAGAAAATGCAGGACAAGGAAACCCACTGAACAAAACCTTTGTGAAGGTTTATAAGTCAGGGTCCTTTGGAAGGTCATTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGTGGTGAACTTGCTCGAATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAACGATGTTCTTCTCCTTGGTGATGGCCCCTGGCCGGAATTCGTAAATAGTGTATGGTGCATAAAGATACTTTCTCCTCAGGAAGTGCTGCAAATGGGCAACAATGGCCTTGAGCTGTTGAACTCGGTTCCAATTCAAAGGCTCTCTAATGGCATCTGTGATGACTATGTGAGCCGTCAAGACCCAAGAAATTTAAGCACTGGGATAACAACTGTGGGGTCTTTAGACTACTAA 2730 0.4601 MRLSSAGFSPPPQEGENRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNMTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHAGMKDDDFGLNSPLLWLRDPDRGLQSLNFQGIRVNPWMQPRFDPTMLNMQTDMYQAAAAAAVQDMRSLDPSKQHSASLLQFQQPQNFPNRTAALIQAQMLQQQPQQIFGNNQENQHSPQSQPQTQAHLQQHLQHQHSFNSQHHHQHQHQHQQQQLQQQTQQQQQQQVVDNQQISSAVSTMSQFVSAPQPQSPPMQAISSLCQQQNFSDSNGNSVTTIVSPLHSILGSFPQDETSQLLNLPRTSSWIPVQNSSGWPSKRVAVDPLLSSGASQCVLPQVEQPQSTVSQNSITLPPFPGRECSIDQEGSNDPQNHLLFGVNIEPLSLLMPNGMSSLKGVSGNNDSSTLPYQSSNYLNITTGTDSSLNHGMTPNIGDSGFLQSPENAGQGNPLNKTFVKVYKSGSFGRSLDITKFSSYHELRGELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVLQMGNNGLELLNSVPIQRLSNGICDDYVSRQDPRNLSTGITTVGSLDY 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00601 909 FunFam Auxin response factor 772 865 - -
Pumo2g00601 909 Gene3D - 125 228 IPR015300 -
Pumo2g00601 909 SUPERFAMILY CAD & PB1 domains 775 851 - -
Pumo2g00601 909 FunFam Auxin response factor 125 229 - -
Pumo2g00601 909 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Pumo2g00601 909 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Pumo2g00601 909 ProSiteProfiles PB1 domain profile. 776 860 IPR000270 GO:0005515
Pumo2g00601 909 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 865 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo2g00601 909 MobiDBLite consensus disorder prediction 495 521 - -
Pumo2g00601 909 MobiDBLite consensus disorder prediction 535 557 - -
Pumo2g00601 909 Gene3D - 291 363 - -
Pumo2g00601 909 FunFam Auxin response factor 291 363 - -
Pumo2g00601 909 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Pumo2g00601 909 MobiDBLite consensus disorder prediction 495 557 - -
Pumo2g00601 909 Pfam AUX/IAA family 770 861 IPR033389 -
Pumo2g00601 909 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo2g00601 909 CDD B3_DNA 126 227 IPR003340 GO:0003677
Pumo2g00601 909 Gene3D - 773 865 - -
Pumo2g00601 909 SMART B3_2 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00601 Pumo-Chr2 9515153 9522318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00601 1 484 B3 DNA Binding Superfamily AT1G30330 86.299 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo2g00601 AUX_IAA 1.3e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00601 - - gmx:100798719 1600.1