Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00591 ATGGGGGATCTGGAGAGAATGGGCAGAGAACTCAAATGTCCCATCTGTTGGAGTTTGCTCGATTCTGCTGTTTCGCTTACCTGCAATCATCTTTTCTGCAACTCATGTATTTTCAAGTCTATGAAATCAGCATCTGCTTGTCCTGTCTGTAAAATTCCTTTCACTCGTCGAGAGGTTCGCCCTGCTCCTCACATGGACAACTTGGTTAGCATATATAAAAACATGGAAGCTGCTTCAGGAATTAATATATTTGTCACCCAGAATGTACCTGTTACTAAATTATCTGAAGGAGAAAAGCAATGCGAAGGTGATGCTGACTCTGGGAAGATGGAAGCTGGTGGAACTCATAAAGGTCATGTGCGGGAGAAGAAAACCTGGAAGAAAAAGAAGTCGAAGAAGACGGTTCAGGCCAGCATGGATAGTTCAGGTTCTGACTTTGCAAAGCCTTCTTTTCCAGCAAAGAAAAGGGTACAGGTGCCGCAAAATCTTCTTTCAGAAACTCCAATGAAGAATCTGAAGATTGGAGACTCTCTTAGTGAAATTAACAAAGACAAAGAGGGAACAGAAAAGGTCTCAGTCATGGAAAGTGAAAGGCCTCTCCAAAGTGAAAAACATGATCCTGTTCTTTCACCTTTCTTTTGGTTGAGAGAGGAAAAAGATGGTGAAAAGTTAAGTCAACAAACTGATGAGGATCAATTTATTGATGGCCCAACACCAAATCCTCCTTCATTCAGTGATCTCAAGGACTCGGATGATGAAAACCCTTCTAATGATGCCCCATTCGATGAGGTGCAAAATAAAAGCTCTATTAATTTATTTGACAGTGAAATGTTTGAATGGACACAAAGGCCTTGCTCTCCTGAATTATTTTCAAGTCCCTCTAAAATGCAGCTGCAGGTCATGGATACTTATGAGGATGAGGAAAATCAAGAGGAATTGATGGCTGCCTCACTAGAGCTGGATGCAAATCAGCCAAGAGTTGATGCTGGCAACATGAAATTTGAGAATTCCAAAGTAAATAGAATGGCTGATGTATTACCACCGAGTGTGTCTCCTCCTCAAATTAAAAGTTCTGATGATCTAAATGGAATTAAGAAGTCTATGAAAAGAAGAAGCAAGGGTAGAGAAGAAAATAGGCAAGTGCAGATTGGGGAACCAAAAAATTCAATTGATGAAATGCATGTTGATTCAACAACTATATCATTAGAAGTCACTCAAGAACAAGCATTGGACTATAAACAGAAATCTTCTAATCTGGGGAAGGATAGTAGAAGAGGCAAGAGGGTTTGTTTCAATACCAATACAATTCCAACGCCTATAACTGCTTGTACAGTCCCCAATACACTAGGAGTTCAAAGCATTGGTGAAATGCAGAAGGCTAAGAATACAGATATTTTGCCATGTACACAAGAAAATGAGAAGCATTGTGCTCAGGAGATTGCTGGAAAAAGCCAAATGAAAAGATCTAGAAAACAAAAGATCAATCAAACCAATGAGTTTGCTGGTTCTGATTCATCCGTTTTCAGTCTGCAAACAGATAATAATGGGAAGAACTCTATGTCTTGCAGTAAAGAATTGAGAACTACTAAAAGGCCAAAACTTTCTTCTGATTGTATCTCTAAGACTAAAAATGGTGAAGAAATTCTACCTATTGAAAGTATTCATCAAGGTCCTGATGTCAGGGATTTGAATGATACATCAAAAGAGAAACATTGTCCTTTGATGGATCAAACAGTTTTAAGGAAATGTGAGAGCCATGTCAAAAAGTATCAATGTGTTTTCTGTCTCTCATCAGAAGAATCAGAGGCTTCTGGTCCTGTGGTGCATTACCTTGATGGCAGGCCTGTAACTGCAGATTATGAAGGGGGATCTAAAGTCACACATTGTCACAGGAACTGCACAGAATGGGCCCCCAATGTATATTTTGATGGTGATAATGCAATAAATCTTGAAGCTGAAATAAGTAGAAGTCGAAGAATTAAATGTTGTTTTTGTGGACTAAAAGGGGCTGCACTTGGTTGTTATGAGAAAAGTTGTCGCAGGAGCTTTCATGTTCCTTGTGCCAAGTGGACTTCTCAATGTCGATGGGATACGCAAAACTTCGTAATGTTATGCCCTCTACATGCTTCCTCCATGTTGCCCTGTGAAGGTTCAAGATCCCAAAAAAGGAGCAAGAAATGCACACCTAGTGAGGGCAAAAGCCTTGGTCCTAAACATGACACTACAAACCAAAGTCGGGCTGCTCATAGATCATACAAGAAAATTGTACTATGTTGTTCTGCTCTATCCGTACAGGAGAGGGAAGTTGTTTCCGAATTTGAAAGAGTATCGAAAGTTACAGTTTTGAAAAATTGGGACTCGAGTGTCACCCATGTTATAGCATCAACGGATGAAAATGGGGCATGCAGAAGAACCCTCAAAGTATTGTTGGGTATCCTGGAGGGAAAGTGGATTCTCAATATTGAGTGGATCAAAGCTTGCATGAAGGAAATGGATCCTGTTGATGAGGAGTGTTATGAAATTAATGTTGACATCCATGGGACTAGGGATGGTCCTCGTCTTGGACGACTAAGAGTATTGAACAAGCAACCAAAGCTTTTTGATGGCTACAAGTTTTATTTTATGGGAGATTTTATACCTTCATATAAGGGGTATCTGCAAGACCTTGTGGTTGCTGCTGGAGGAATAATTCTGCACAGAAAACCAGTCTCTGGTGACCAAGAATCAACATCACCAGATATGCATCCATACCAAACCCTTATAATTTACAGCCTCGAGCTTCCTGATAAATGTAAGCCTTCAAAAAAGGATACAATTTGCAGCCAAAGGCGTCGTGATGCGGAGGTTCTGGCAAGTTCTACAGGTTCAAAGGTTGCAAGTAATACATGGGTTCTGAATTCAATTGCAGCCTGCAAACTGCAATGCCTTTCTCAATGA 2937 0.4028 MGDLERMGRELKCPICWSLLDSAVSLTCNHLFCNSCIFKSMKSASACPVCKIPFTRREVRPAPHMDNLVSIYKNMEAASGINIFVTQNVPVTKLSEGEKQCEGDADSGKMEAGGTHKGHVREKKTWKKKKSKKTVQASMDSSGSDFAKPSFPAKKRVQVPQNLLSETPMKNLKIGDSLSEINKDKEGTEKVSVMESERPLQSEKHDPVLSPFFWLREEKDGEKLSQQTDEDQFIDGPTPNPPSFSDLKDSDDENPSNDAPFDEVQNKSSINLFDSEMFEWTQRPCSPELFSSPSKMQLQVMDTYEDEENQEELMAASLELDANQPRVDAGNMKFENSKVNRMADVLPPSVSPPQIKSSDDLNGIKKSMKRRSKGREENRQVQIGEPKNSIDEMHVDSTTISLEVTQEQALDYKQKSSNLGKDSRRGKRVCFNTNTIPTPITACTVPNTLGVQSIGEMQKAKNTDILPCTQENEKHCAQEIAGKSQMKRSRKQKINQTNEFAGSDSSVFSLQTDNNGKNSMSCSKELRTTKRPKLSSDCISKTKNGEEILPIESIHQGPDVRDLNDTSKEKHCPLMDQTVLRKCESHVKKYQCVFCLSSEESEASGPVVHYLDGRPVTADYEGGSKVTHCHRNCTEWAPNVYFDGDNAINLEAEISRSRRIKCCFCGLKGAALGCYEKSCRRSFHVPCAKWTSQCRWDTQNFVMLCPLHASSMLPCEGSRSQKRSKKCTPSEGKSLGPKHDTTNQSRAAHRSYKKIVLCCSALSVQEREVVSEFERVSKVTVLKNWDSSVTHVIASTDENGACRRTLKVLLGILEGKWILNIEWIKACMKEMDPVDEECYEINVDIHGTRDGPRLGRLRVLNKQPKLFDGYKFYFMGDFIPSYKGYLQDLVVAAGGIILHRKPVSGDQESTSPDMHPYQTLIIYSLELPDKCKPSKKDTICSQRRRDAEVLASSTGSKVASNTWVLNSIAACKLQCLSQ 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00591 978 ProSiteProfiles BRCT domain profile. 862 978 IPR001357 -
Pumo2g00591 978 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 81 IPR013083 -
Pumo2g00591 978 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 2 976 IPR031099 GO:0006281|GO:0006974
Pumo2g00591 978 Pfam PHD-like zinc-binding domain 630 708 - -
Pumo2g00591 978 MobiDBLite consensus disorder prediction 98 119 - -
Pumo2g00591 978 MobiDBLite consensus disorder prediction 362 382 - -
Pumo2g00591 978 FunFam Breast cancer type 1 susceptibility protein homolog 752 858 - -
Pumo2g00591 978 ProSiteProfiles BRCT domain profile. 780 841 IPR001357 -
Pumo2g00591 978 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 586 711 IPR013083 -
Pumo2g00591 978 ProSiteProfiles Zinc finger RING-type profile. 13 51 IPR001841 -
Pumo2g00591 978 MobiDBLite consensus disorder prediction 98 266 - -
Pumo2g00591 978 MobiDBLite consensus disorder prediction 714 747 - -
Pumo2g00591 978 MobiDBLite consensus disorder prediction 719 733 - -
Pumo2g00591 978 Pfam Zinc finger, C3HC4 type (RING finger) 12 50 - -
Pumo2g00591 978 MobiDBLite consensus disorder prediction 177 229 - -
Pumo2g00591 978 Coils Coil 301 321 - -
Pumo2g00591 978 SMART PHD_3 661 709 IPR001965 -
Pumo2g00591 978 SMART BRCT_7 864 971 IPR001357 -
Pumo2g00591 978 SMART BRCT_7 750 831 IPR001357 -
Pumo2g00591 978 FunFam Protein BREAST CANCER SUSCEPTIBILITY 1 like 863 971 - -
Pumo2g00591 978 Gene3D BRCT domain 863 971 IPR036420 -
Pumo2g00591 978 Gene3D BRCT domain 751 857 IPR036420 -
Pumo2g00591 978 SMART ring_2 13 50 IPR001841 -
Pumo2g00591 978 SMART ring_2 662 708 IPR001841 -
Pumo2g00591 978 MobiDBLite consensus disorder prediction 344 390 - -
Pumo2g00591 978 SUPERFAMILY BRCT domain 755 850 IPR036420 -
Pumo2g00591 978 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Pumo2g00591 978 CDD BRCT_Bard1_rpt1 755 830 - -
Pumo2g00591 978 FunFam Breast cancer associated RING 1 586 711 - -
Pumo2g00591 978 SUPERFAMILY RING/U-box 4 74 - -
Pumo2g00591 978 Pfam BRCA1 C Terminus (BRCT) domain 780 828 IPR001357 -
Pumo2g00591 978 FunFam Breast cancer associated RING 1 1 83 - -
Pumo2g00591 978 SUPERFAMILY BRCT domain 866 974 IPR036420 -
Pumo2g00591 978 ProSiteProfiles Extended PHD (ePHD) domain profile. 589 709 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00591 Pumo-Chr2 9403089 9409296 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00591 6 87 RAD5 or RAD16-like Gene Family AT5G22750 30.588 5.90e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00591 K10683 - gmx:100804958 1725.29