Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00577 ATGAGGAGGAACTGCAACTTGGAACTTGCCCTTTTTCCTCCCTGCGATTCTGGCCCCCGCCACCACTCCATGGTTGAAGAAGGTAGTGAGATCAGCCCTATGCAAAATTTCTTCCATCACCACCACCGGCAGGAACAGCAACAGCCGCTCACCATTTTCTATGATGGCAAGATTTGTGTTGCGGATGTCACAGAGCTTCAGGCCAAATCGATTTTAATGCTTGCAAATAGAAAATTGGAGGAAAGAGTGAGGACACCAACTGGGTCAGAGCCATCTTCACCAACAGTGATGCCATCTAATAATCAATTGTATAGCCCTGGCACTGGTCTTTCCATGAGAAAATCGTTGCAAAGGTTCCTTCAGAAGAGAAAGAATCGGGTTCAAGAAGCATCGCCATACCATCACTAG 408 0.4706 MRRNCNLELALFPPCDSGPRHHSMVEEGSEISPMQNFFHHHHRQEQQQPLTIFYDGKICVADVTELQAKSILMLANRKLEERVRTPTGSEPSSPTVMPSNNQLYSPGTGLSMRKSLQRFLQKRKNRVQEASPYHH 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00577 135 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 29 133 IPR040390 -
Pumo2g00577 135 MobiDBLite consensus disorder prediction 86 110 - -
Pumo2g00577 135 MobiDBLite consensus disorder prediction 79 110 - -
Pumo2g00577 135 Pfam Jas motif 113 133 IPR018467 -
Pumo2g00577 135 SMART tify_2 43 77 IPR010399 -
Pumo2g00577 135 ProSiteProfiles Tify domain profile. 43 77 IPR010399 -
Pumo2g00577 135 Pfam tify domain 45 76 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00577 Pumo-Chr2 9212359 9215147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00577 1 134 Tify Gene Family AT1G30135 43.796 3.34e-26 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pumo2g00577 tify 3.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00577 - - gmx:100500349 247.284