Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00549 ATGGTTACATTCAGGGTGCGTAAAATTCACACCATTCGGTGTTCGATTTCATTTTCCCCTGGTAACGATTTTCACGATGTGGTGTTTGTTTTGTGTGTTTGCAGTTTCACCAGTACCAGGTATTTTCTGAGGAAACTGAAGAAGGTCAAGAAGAGCAATGGTCAAGTGCTTGCTATCAATGAGATTTTTGAGAAGAACCCAACCAAGATTAAGAACTATGGGATATGGTTGAGGTATCAGAGTAGGACCGGTTATCACAACATGTACAAGGAGTACCGTGACACCACTCTAAACGGTGCAGTTGAGCAGATGTACAATGAGATGGCTTCTCGTCACAGGGTCAGGTTCCCCTGCATCCAAATTATCAAGACTGCGACTATCCCAGCTAAGCTTTGCAAGAGGGAGAGCACCAAGCAATTCCACAATTCCAAAATCAAGTTCCCATTGGTCTTCAAGAAAGTTAGACCACCTACCAGGAAGCTGAAGACCACATACAAGGCCAAAAAGCCCAACTTGTTTATGTAA 525 0.4343 MVTFRVRKIHTIRCSISFSPGNDFHDVVFVLCVCSFTSTRYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRFPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKAKKPNLFM 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00549 174 PANTHER 60S RIBOSOMAL PROTEIN L18A 41 173 IPR028877 -
Pumo2g00549 174 SUPERFAMILY RplX-like 67 142 - -
Pumo2g00549 174 Coils Coil 173 174 - -
Pumo2g00549 174 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 40 124 IPR023573 GO:0003735|GO:0005840|GO:0006412
Pumo2g00549 174 FunFam 60S ribosomal protein L18a 68 143 - -
Pumo2g00549 174 Gene3D - 67 140 - -
Pumo2g00549 174 Gene3D - 31 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00549 Pumo-Chr2 8825886 8827659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00549 22 174 Cytoplasmic Ribosomal Protein Gene Family AT3G14600 81.132 3.46e-92 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00549 K02882 K22683 tcc:18596518 275.789