Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00548 ATGGAGCAGTACGGCCGGTCCAGTGAAGGTTCGCGGTCTGATCCGTCGCTGGAATGGGCCGGGCCTGAAGCCCAAACCGGGCTGGAAGAGCCTATGTGGCAATTGGGAATGGGTGCTGGGGAGGAATCGTATCCGCAACGTCCCGATGAGGTTGATTGCACTTACTATTTGAGGACCGGCTTCTGTGGCTTCGGTTCCCGCTGTCGGTTCAACCATCCTCGTGACCGTGCTGCGATTGTTGGAGCTGAGAGGACTGCAGGGGAGTATCCGGAACGAGTAGGCCAGCCTGTGTGCCAGTATTATATGAGGACAAGAACATGCAAGTTTGGTTCTTCTTGCAAGTACCACCACCCCAGGCTGGCAGGAGGCGCTGCTGCTACCCCTGTGTCACTAAATTATTATGGATATCCATTGCGACCGGGTGAGAAGGAGTGTTCGTATTATGTGAAAACGGGACAATGCAAGTTTGGCGCAACTTGCAAATTCCATCATCCAGTTCCTGCTGGCGTCCAAGTTCCAGCACCATCACCAGTTGCCCCAGTTTCACATTTGCCTGTACCAGTACCTTCGCCGTTATACTCAACCATGCAGCCCCCACCTGGTCCTTCATCCCAGCAAATTGGTGTGCTGGTTGCGAGGCCTCCTCTGATGCCTGGCTCATTAGTCCAGAGCCCCTACGGACCTGTGGTTCTGTCCCCTGCCATGGTACCTATTTCTGGCTGGGGTCCATATCAAGCTTCTGCGACAGGCGCTGTACTTCCTTCTGGTACTCCATCTAATGTGGGTTCAGCACAGCTTTATGGGATAACCCAGCTACCTTCATCACCAGCTGCCTATCCTGGACCTTATCAACCTTCTGGTTCTTCAGTTGGTCCTTCAAGCAGTAGTCAGAAGGAGCAGGCATTTCCAGAAAGGTCTAATCAACCAGAATATCAGTATTATCCGAAAACAGGGGAGGTTAAATTTGGTCCATCATATAGGTATAACCCTCCACCAGACATGAGTGCACCAAAAGCAAATGTGATTCTTAGTCCTGCAGGTCTTCCTTTGCGCCCGGGGGCACCACCTTGCACGCATTATGCACAACATGGAGTATGTAAGTTTGGTTCTGCATGCAAATTCGATCATCCTATAGGATCACTGAGTTATAGTCCTTCTGCTTCTTCCCTGGCTGACATGCCAGTTGCACCCTATCCTGTGGGTTCAACAATTGCTACTCTTGCTCCATCATCTTCATCTTCAGAGTTGCGGCCCGAACTTACCTCAGGATCCAGCAAGGAGTCTGTTCCATCCAGAATGTCTTCATCAATGGGCATGTTGACTGGGTCAATTGGCTTGACTTTGTCGACTGGTGCACCTGTTTCTCAATCAAGCACTCAACCACCTGCCCAAAGTTCAGGTTCTTTAGCCGCTGTCACTAGCACCACAAGTAGCAATGCCTCTCACACCTCAAGCTAA 1458 0.5123 MEQYGRSSEGSRSDPSLEWAGPEAQTGLEEPMWQLGMGAGEESYPQRPDEVDCTYYLRTGFCGFGSRCRFNHPRDRAAIVGAERTAGEYPERVGQPVCQYYMRTRTCKFGSSCKYHHPRLAGGAAATPVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPVPAGVQVPAPSPVAPVSHLPVPVPSPLYSTMQPPPGPSSQQIGVLVARPPLMPGSLVQSPYGPVVLSPAMVPISGWGPYQASATGAVLPSGTPSNVGSAQLYGITQLPSSPAAYPGPYQPSGSSVGPSSSSQKEQAFPERSNQPEYQYYPKTGEVKFGPSYRYNPPPDMSAPKANVILSPAGLPLRPGAPPCTHYAQHGVCKFGSACKFDHPIGSLSYSPSASSLADMPVAPYPVGSTIATLAPSSSSSELRPELTSGSSKESVPSRMSSSMGMLTGSIGLTLSTGAPVSQSSTQPPAQSSGSLAAVTSTTSSNASHTSS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00548 485 Gene3D - 45 125 - -
Pumo2g00548 485 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Pumo2g00548 485 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Pumo2g00548 485 MobiDBLite consensus disorder prediction 277 315 - -
Pumo2g00548 485 PANTHER PROTEIN PHOSPHATASE RELATED 27 412 - -
Pumo2g00548 485 SUPERFAMILY CCCH zinc finger 49 76 IPR036855 GO:0046872
Pumo2g00548 485 MobiDBLite consensus disorder prediction 286 313 - -
Pumo2g00548 485 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Pumo2g00548 485 MobiDBLite consensus disorder prediction 408 485 - -
Pumo2g00548 485 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Pumo2g00548 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Pumo2g00548 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Pumo2g00548 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Pumo2g00548 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 354 377 IPR000571 GO:0046872
Pumo2g00548 485 Gene3D - 126 173 - -
Pumo2g00548 485 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Pumo2g00548 485 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Pumo2g00548 485 SMART c3hfinal6 351 378 IPR000571 GO:0046872
Pumo2g00548 485 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Pumo2g00548 485 SUPERFAMILY CCCH zinc finger 95 118 IPR036855 GO:0046872
Pumo2g00548 485 SUPERFAMILY CCCH zinc finger 355 381 IPR036855 GO:0046872
Pumo2g00548 485 Gene3D - 351 408 - -
Pumo2g00548 485 MobiDBLite consensus disorder prediction 1 25 - -
Pumo2g00548 485 ProSiteProfiles Zinc finger C3H1-type profile. 351 379 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00548 Pumo-Chr2 8807430 8815533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00548 1 453 C2H2 Transcription Factor Family AT5G18550 56.559 4.38e-152 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo2g00548 zf-CCCH 3.6e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00548 - - gmx:100812433 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00548 2 8807430 8815533 Pumo2g00548 2 8807430 8815533 ECH
Pumo4g00335 4 4708676 4714045 Pumo2g00548 2 8807430 8815533 PCT