Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00547 ATGATGAAGTCACTGTCTTTAAAAGACTTCCCACAACTTCACCCTTTTCATTCATATTCTCTTCTATGCTCCCTTGAGGTGGCACTATTTAACTTCCCTTTCCTCCTCTCATCAAACACACACTTTCTTGCCATTTTCCAAGCCATGTCCACCCCTAGAGCCTCAGATGCTTCCCTCAAAGGATATGAATCCAACCAAACCCAAATGAATTTATCTCTTCTTCAACGTAATACATCAACTTCTGGTGAGAGAAGAGGCCGAGGAAAGCAAGCAGAACCTGGAAGGTTTCTTGGAGTAAGAAGGCGCCCTTGGGGTAGATATGCTGCTGAAATCAGAAACCCTTTAACTAAAGAAAGACATTGGCTTGGAACATTTGACACTGCTCAAGAAGCTGCTCTTGCTTATGACAGAGCTGCCCTGTCCATGAAAGGATGCCAGGCAAGAACCAACTTCATATATTCTAAAGATACCAATACCAACATTTTCCACAATGCTCAACCTCTCTTGCCACCTTCACATAGCACTCACAACACACAACCAACCAATCAAAGTGGCCTATCTCACCTTGGTGCTAACACTTCCCACATTGAAAACCCTTCTGACATGAGTGCATATGGGTCACCTCAGGATGATAATTTCTTCTTCTCCAGTGATTCTAACTCGGGCTATCTTGAATGCATAGTTCAGGATAACTGTTTCAGGAAGAGCAATGCCAGTGCTTCGAGTCACGTTAACTCAAACTCCATGCAGGTTCAGTCACATTTTGACACCTCTCAAGAAGCCTTGAACATGCAAACAACAGTTCCAATGTCATGGGATAGTCAGCAATCATGGGATTGCAGTTCCAATGAACTAGCAGCTATGTTTAAAAATCCATCAAGGGCTGAGGAAGGGTGCGTGAATGCGTTGTATCCCTTCACTGATAGTTCAAGCTGCTACGGGTTCATGACTCAGGCTGAGGCTGTTTCTTCAACTACCTGTTCTCCATCACTTCCTCCCTTTGGGGATGTTGATTTGGGATACTCACCCTTCTGA 1035 0.4415 MMKSLSLKDFPQLHPFHSYSLLCSLEVALFNFPFLLSSNTHFLAIFQAMSTPRASDASLKGYESNQTQMNLSLLQRNTSTSGERRGRGKQAEPGRFLGVRRRPWGRYAAEIRNPLTKERHWLGTFDTAQEAALAYDRAALSMKGCQARTNFIYSKDTNTNIFHNAQPLLPPSHSTHNTQPTNQSGLSHLGANTSHIENPSDMSAYGSPQDDNFFFSSDSNSGYLECIVQDNCFRKSNASASSHVNSNSMQVQSHFDTSQEALNMQTTVPMSWDSQQSWDCSSNELAAMFKNPSRAEEGCVNALYPFTDSSSCYGFMTQAEAVSSTTCSPSLPPFGDVDLGYSPF 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00547 344 CDD AP2 95 151 IPR001471 GO:0003700|GO:0006355
Pumo2g00547 344 SMART rav1_2 95 158 IPR001471 GO:0003700|GO:0006355
Pumo2g00547 344 FunFam Ethylene-responsive transcription factor 2 95 153 - -
Pumo2g00547 344 Pfam AP2 domain 98 144 IPR001471 GO:0003700|GO:0006355
Pumo2g00547 344 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700|GO:0006355
Pumo2g00547 344 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Pumo2g00547 344 Gene3D AP2/ERF domain 95 153 IPR036955 GO:0003700|GO:0006355
Pumo2g00547 344 SUPERFAMILY DNA-binding domain 96 153 IPR016177 GO:0003677
Pumo2g00547 344 ProSiteProfiles AP2/ERF domain profile. 95 152 IPR001471 GO:0003700|GO:0006355
Pumo2g00547 344 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 70 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00547 Pumo-Chr2 8804658 8805692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00547 49 234 AP2-EREBP Transcription Factor Family AT5G18560 46.341 6.79e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo2g00547 AP2 5.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00547 - - gmx:102664746 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00334 4 4705024 4706052 Pumo2g00547 2 8804658 8805692 PCT