Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00538 ATGGGTGGGTGTTTTCCTTGTTTTGGATCATCCAACAAGGAGGACAGTGGTGGGGTGAGGGTCAAGGAGGTGCCCAACAAGGATTCTTCTTTTAAGGAAGCTGCTTCTGTTGTTCCTCAGTCTCACCACCCCAGCAGGGTTAACTCAGATAAATCAAAATCATCACGAAGTGGCACAGATACTAAGAAGGAAACACCGGTTCCAAAGGATGGCCCAACGGCCAATATTGCTGCACAAACATTTACATTCCGAGAGCTTGCAGCTGCTACAAAGAATTTTAGGCCAGAATGTTTATTAGGCGAAGGAGGCTTTGGGCGAGTTTACAAAGGTCGCCTTGAGAGCACAGGACAAGTAGTTGCTGTAAAACAGCTTGACCGAAATGGTCTTCAAGGAAATCGAGAGTTTTTGGTGGAAGTTCTTATGCTCAGTCTCTTGCATCATCCAAATCTTGTGAACTTAATTGGTTATTGCGCTGATGGTGATCAGCGGCTGCTTGTTTATGAATTTATGCCATTGGGATCTTTGGAGGATCATTTACACGATCTTCCTCCTGACAAAGAGCCTCTGGACTGGAACACTAGGATGAAAATAGCAGCTGGAGCTGCAAAGGGATTGGAATATTTGCATGACAAGGCAAATCCTCCAGTGATTTATAGAGACTTAAAATCATCCAACATCCTCCTCGACGAGGGTTATCATCCCAAGTTATCAGATTTTGGGCTGGCAAAACTTGGTCCAGTTGGCGACAAGACTCATGTATCCACACGAGTAATGGGAACATATGGCTATTGTGCCCCAGAATATGCTATGACTGGTCAACTAACTCTGAAATCTGATGTATACAGTTTCGGAGTTGTCTTCCTTGAACTCATTACTGGGCGCAAGGCTATTGACAATACACGTGCACATGGAGAGCATAATCTTGTTGCATGGGCACGGCCGCTTTTCAAAGACCGTAGGAAGTTCCCCAAAATGGCTGACCCTCTACTTCAAGGCCGTTACCCAATGCGAGGACTGTACCAAGCACTTGCAGTTGCTGCAATGTGTCTGCAGGAACAAGCTGCTACAAGGCCTCTTATTGGGGATGTGGTGACTGCTCTCACATATCTGGCCTCGCAGACATATGATCCAAATGCAGCCAACCAATCCAACAGGGTTGGCCCATCAACCCCTAGGATTAGGGATGACAGAAGGAGCATGGCGGATGGTGTGGACAGCCCTGACCGTGGCCGGCTTGGCTCCCCTTCCACCCACAGAAACTCACCTGACTTCAGGAAGAGGGACAGCAGGGATCCAAGCGCCGCGACCGAGTTAGGCAGGACTGACACCGGTGGGGGGTCAGGGGAAAATGGGGATTGGATGATTATGAAAGGCAGGAGTCTCAGAGAGACAGCCCTGTAA 1401 0.4825 MGGCFPCFGSSNKEDSGGVRVKEVPNKDSSFKEAASVVPQSHHPSRVNSDKSKSSRSGTDTKKETPVPKDGPTANIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAANQSNRVGPSTPRIRDDRRSMADGVDSPDRGRLGSPSTHRNSPDFRKRDSRDPSAATELGRTDTGGGSGENGDWMIMKGRSLRETAL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00538 466 SMART serkin_6 93 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g00538 466 Gene3D Phosphorylase Kinase; domain 1 66 169 - -
Pumo2g00538 466 FunFam Serine/threonine-protein kinase PBS1 66 169 - -
Pumo2g00538 466 MobiDBLite consensus disorder prediction 377 466 - -
Pumo2g00538 466 Pfam Protein kinase domain 98 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g00538 466 SUPERFAMILY Protein kinase-like (PK-like) 76 367 IPR011009 -
Pumo2g00538 466 MobiDBLite consensus disorder prediction 420 435 - -
Pumo2g00538 466 MobiDBLite consensus disorder prediction 1 74 - -
Pumo2g00538 466 CDD STKc_IRAK 99 368 - -
Pumo2g00538 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Pumo2g00538 466 ProSiteProfiles Protein kinase domain profile. 93 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g00538 466 MobiDBLite consensus disorder prediction 390 405 - -
Pumo2g00538 466 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Pumo2g00538 466 PANTHER OS07G0668900 PROTEIN 4 379 - -
Pumo2g00538 466 MobiDBLite consensus disorder prediction 46 67 - -
Pumo2g00538 466 FunFam Serine/threonine-protein kinase PBS1 170 385 - -
Pumo2g00538 466 Gene3D Transferase(Phosphotransferase) domain 1 170 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00538 Pumo-Chr2 8631090 8639645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00538 4 435 Glycoside Hydrolase AT3G07070 58.770 7.49e-174 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Pumo2g00538 Pkinase 4.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00538 - - gmx:100814575 882.478