Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00537 ATGGCGAGACCTTCCAAGCCACACTCATCTTCCGACGAAGTGCTCTCCAATGCTTCGAGTTCGTCCGAGGAAGAGGAGCAGCTAGTCAACGAGCAGATCAACGAAGAGGAAGACGAGGAGGAGCTCGAGACGGTGGCGCGCCCCGCCAGCTCCGACGACGACGACGACGACGAAGTCGCTGGCGACAATCCGCCGGACTCCGACGAAGATCCCGCCGCCGCCGACGATGATCAGGGTGGGGATAATGTTGATCCCGAAATTAGCAAGCGAGAGAAGGCTAGATTAAAAGATATGCAGAAAATGAAGAAGCAGAAGATTGAGGAGATACTGGATGCACAGAATGCGGCCATTGATGCTGACATGAACAATAGAGAAAAGGGGCGTCTAAAGTATCTCTTGCAGCAGACTGAGTTGTTTGCTCATTTTGCAAGAGGGGATCAATCTTCGTCTCAGAAGAAGAAGTCAAGGGGAAGGGGTCGCCACACATCCAATTTCACCGAGGAAGAGGAAGACGAAGAATACCTAAAAGAAGAAGAAGATGGTGTAGCAAACACACGTCTGGTGACACAACCATCTTGTATCCAAGGGAAGATGAGGGATTACCAACTGGCTGGACTAAACTGGCTCATACGATTGTATGAGAATGGAATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACTATATCTTTATTGGGTTATTTGTACGAGTTCAGAGGAATCAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTCTCCGTGCAATTAAGTTTCTTGGCAACCCCGAAGAAAGGAGACATATAAGAGAGGAATTGTTGGTTGCCGGGAAGTTAGATGTTTGTGTGACAAGTTTTGAAATGGCTATCAAGGAGAAGTCTGCTTTGTGTCGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAGAATTCCTCGCTGTCGAAAACAATGAGGCTCTACAGTACAAACTACCGCCTCCTTATTACTGGCACACCACTTCAGGTCCTCCGCCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCGAAAAAGGAAATTATTCTTAAAGTAGGAATGTCCCAAATGCAGAAACAGTATTATAGAGCACTACTTCAGAAGGATCTTGCGGTTGTAAATGCTGGTAGTGAACGGAAGCGCCTCCTGAACATAGCTATGCAACTACGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCCAGTCCTCCCTACACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGCGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAGGATTATTTAATGTTCCAACGATATCAGTATTGTCGCATTGATGGAAATACTGGTGGGGATGATCGAGATGCTTCCATTGATGCATTCAACAAACCAGGAAGTGAGAAATTTGTCTTCCTGTTATCAACTCATGCTGGAGGTCTTGGTATTAATCTTGCTACTACCGATGTTGTCATTCTGTACGATAGTGACTGGAACCCACAAGTTGACTTACAGGCTCAGGATCGTGCTCATAGGATTGGTCAGAAGAAAGAAGTTCAAGTTTTCCGTTTTTGTACTGAGTATACAATTGAAGAGAGAGTCATTGAAAGGGCCTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCGATTGGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACTGCTGAGCTTGATGCCAAGATAAAGAAATTTACTGAAGATGCCATCAAATTTAAGATGGATGACACTGCTGAGTTATATGATTTTGATGATGAGAAGTTGTTCAACACACAAAGGTTGAGTGAGCTGTACGAAAAGGAAGTACGCTATCTCATGCAAACACACCAGAAGAATCAGGTAAAGGACTCAATAGATGTTGATGAACCAGAAGGTATGTGGGTACTCAATAAAACTAGTACTTTGACTCCTCCTTTCTACATGTACATCGCATTTTCATCATGGAGCCGGAGGGATTTCAATACTTTCATTAGGGCCTGCGAAAAATATGACCGCAATGATATAAAAGGTATTGCTTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGGTATAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCATGGCTAGAGTTGAAGATACAGTATGGCCAAAACAAAGGGAAGTTGTACAATGAAGAATGTGACAGATTCATGATATGCATGGTACACAAACTTGGCTATGGGAACTGGGATGAGTTAAAGGCAGCATTTCGAACATCACCCTTGTTTCGATTTGATTGGTTTGTTAAGTCTCGCACAACTCAGGAACTGGCTAGGAGGTGTGACACCCTCATTCGACTGGTAGAAAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCCAAAAGCATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGATAGTCCATCTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGATGATTATGCAAGCACGGTATGCATACTTACTAAATGTGTTATATTCCTTCTTGATTACGTAGTTTCTTGCTGCGTTTTTATTGAAGCAGTTCATGCTGTTGTGGCAGGGGAAGAGAAGAAAATAAATGAACATACGCTCTATATTGCATATCGTAAGGGGTTGTTGGGTTTAAAAGCCTTGGTGATTTTGATGTGGCCCAGACATGACAATTGA 3078 0.4279 MARPSKPHSSSDEVLSNASSSSEEEEQLVNEQINEEEDEEELETVARPASSDDDDDDEVAGDNPPDSDEDPAAADDDQGGDNVDPEISKREKARLKDMQKMKKQKIEEILDAQNAAIDADMNNREKGRLKYLLQQTELFAHFARGDQSSSQKKKSRGRGRHTSNFTEEEEDEEYLKEEEDGVANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLYEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPEERRHIREELLVAGKLDVCVTSFEMAIKEKSALCRFSWRYIIIDEAHRIKNENSSLSKTMRLYSTNYRLLITGTPLQVLRPFLLRRLKSDVEKGLPPKKEIILKVGMSQMQKQYYRALLQKDLAVVNAGSERKRLLNIAMQLRKCCNHPYLFQGAEPSPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFQRYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTHAGGLGINLATTDVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEERVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKIKKFTEDAIKFKMDDTAELYDFDDEKLFNTQRLSELYEKEVRYLMQTHQKNQVKDSIDVDEPEGMWVLNKTSTLTPPFYMYIAFSSWSRRDFNTFIRACEKYDRNDIKGIASEMEGKTEEEVERYAKVFKERYKELNGIIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALARQTDSPSSLKKRKQLTMDDYASTVCILTKCVIFLLDYVVSCCVFIEAVHAVVAGEEKKINEHTLYIAYRKGLLGLKALVILMWPRHDN 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00537 1025 CDD SANT 746 790 IPR001005 -
Pumo2g00537 1025 MobiDBLite consensus disorder prediction 82 99 - -
Pumo2g00537 1025 Gene3D - 744 824 - -
Pumo2g00537 1025 SMART helicmild6 484 568 IPR001650 -
Pumo2g00537 1025 Coils Coil 898 925 - -
Pumo2g00537 1025 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 375 IPR014001 -
Pumo2g00537 1025 MobiDBLite consensus disorder prediction 50 81 - -
Pumo2g00537 1025 Pfam SNF2-related domain 211 359 IPR000330 GO:0005524|GO:0140658
Pumo2g00537 1025 MobiDBLite consensus disorder prediction 915 947 - -
Pumo2g00537 1025 MobiDBLite consensus disorder prediction 9 27 - -
Pumo2g00537 1025 SMART sant 843 904 IPR001005 -
Pumo2g00537 1025 SMART sant 743 792 IPR001005 -
Pumo2g00537 1025 Gene3D - 374 666 IPR027417 -
Pumo2g00537 1025 SUPERFAMILY Homeodomain-like 800 918 IPR009057 -
Pumo2g00537 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 651 IPR027417 -
Pumo2g00537 1025 Coils Coil 19 42 - -
Pumo2g00537 1025 Pfam SLIDE 800 908 IPR015195 GO:0003677|GO:0005634|GO:0006338
Pumo2g00537 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 368 IPR027417 -
Pumo2g00537 1025 Coils Coil 88 115 - -
Pumo2g00537 1025 FunFam ISWI chromatin-remodeling complex ATPase CHR11 829 932 - -
Pumo2g00537 1025 MobiDBLite consensus disorder prediction 28 43 - -
Pumo2g00537 1025 Gene3D - 166 360 IPR038718 -
Pumo2g00537 1025 MobiDBLite consensus disorder prediction 143 178 - -
Pumo2g00537 1025 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 743 797 - -
Pumo2g00537 1025 SUPERFAMILY Homeodomain-like 746 796 IPR009057 -
Pumo2g00537 1025 SMART ultradead3 194 384 IPR014001 -
Pumo2g00537 1025 FunFam ISWI chromatin-remodeling complex ATPase CHR11 374 666 - -
Pumo2g00537 1025 CDD SF2_C_SNF 454 579 - -
Pumo2g00537 1025 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 458 609 IPR001650 -
Pumo2g00537 1025 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 101 952 - -
Pumo2g00537 1025 Pfam Helicase conserved C-terminal domain 456 568 IPR001650 -
Pumo2g00537 1025 ProSiteProfiles SANT domain profile. 742 794 IPR017884 -
Pumo2g00537 1025 MobiDBLite consensus disorder prediction 915 929 - -
Pumo2g00537 1025 Gene3D - 829 932 - -
Pumo2g00537 1025 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00537 Pumo-Chr2 8612462 8629812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00537 219 595 RAD5 or RAD16-like Gene Family AT1G02670 25.200 1.02e-28 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo2g00537 SNF2_N 3.5e-36 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00537 K11654 - gmx:100791510 1480.31