Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00524 ATGGCGAGACCTTCCAAGCCACACTCATCTTCCGACGAAGCGCTCTCCAATGCTTCGAGTTCGTCCGAGGAAGAGGAGCAGGTCAACGAGCAGATCAACGAAGAAGAAGACGAGGAGGAGCTCGAGGCGGTGGCGCGCCCCGCCAGCTCCGACGACGACGACGACGACGACGAAGTCGCCGGCGACAATCCGCCGGACTCCGATGAAGATCCCGCCGCCGCCGATGACGCCGACGATGACCAGGGTGGGGATAATGTTGATCCCGAAATTAGCAAGCGAGAGAAGGCTAAATTAAAAGAAATGCAGAAAATGAAGAAACAGAAGATTCAGGAGATACTGGATGCACAAAATGCGGCCATTGACGCTGACATGAATAATAGAGGAAAGGGGCGTCTGAAGTATCTCTTGCAGCAGACTGAGCTGTTTGCTCATTTTGCAAAAGGGGATCAATCTTCGTCTCAGAAGAAGTCAAGGGGAAGGGGTCGCCACGCATCCAATTTCACCGAGGAAGAGGAAGACGAAGAATACCTAAAAGGAGAAGAAGATGGTGTAGCAAACACACGTCTGGTGACACAACCATCTTGTATCCAAGGGAAGATGAGGGATTACCAACTGGCTGGGCTAAACTGGCTCATACGATTGTATGAGAATGGAATAAATGGAATTTTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACTATATCTTTATTGGGTTATTTGCACGAGTTCAGAGGAATCAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTCTTCGTGCAATTAAGTTTCTTGGCAACCCTGAAGAAAGGAGACATATAAGAGAGGAATTGTTGGTTGCCGGGAAGTTTGATGTTTGTGTGACAAGTTTTGAAATGGCTATCAAGGAGAAGTCTGCTTTGCGTCGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAGAATTCCTTGCTGTCCAAAACAATGAGGCTCTACAGTACAAACTACCGCCTCCTTATTACTGGCACACCACTTCAGAATAATCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGGTCCTCCGCCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCGAAAAAGGAAACTATTCTTAAAGTAGGAATGTCCCAAATGCAGAAACAGTATTATAGAGCACTACTTCAGAAGGATCTTGAGGTTGTAAATGCTGGTGGTGAACGGAAGCGCCTCCTGAACATAGCTATGCAACTACGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCCGGTCCTCCCTACACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGCGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTAGAGGATTATTTAATGTTCCGTGGATATCAATATTGTCGTATTGATGGAAATACTGGTGGGGATGATCGAGATGCTTCCATTGATGCATTCAACAAACCAGGAAGTGAGAAATTTGTCTTCCTGTTATCAACTCGTGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTTGTCATTCTGTATGATAGTGACTGGAACCCACAAGTTGACTTACAGGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGTTTTTGTACTGAGTATACAATTGAAGAGAAAGTCATTGAAAGGGCCTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCGATTGGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACTGCTGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGATGCCATCAAATTTAAGATGGATGACACTGCTGAGTTATATGATTTTGATGATGAGAAGGATGAGAACAGATTTGATATCAAAAAAATTGTGAGTGAGAACTGGATTGAACCACCAAAAAGGGAGCGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGTCCTACCAAACCAAAAGAGCCCCGTATTCCTAGGATGCCCCAGTTGCATGATTTCCAGTTTTTCAACACACAAAGGTTGACTGAGCTGTACGAAAAGGAAGTACGCTATCTCATGCAAACACACCAGAAGAATCAGATAAAGGACTCAATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCATTGACTGCTGAAGAGTTGGAAGAAAAGGAGCGCTTGCTAGAAGAGGGATTTTCATCATGGAGCCGGAGGGATTTCAATACTTTCATTAGGGCCTGCGAAAAATATGGCCGCAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGGAAAACTGAGGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCATGGCTAGAGTTGAAGATACAATATGGCCAAAACAAAGGGAAGTTGTACAATGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAACTGGGATGAGTTAAAGGCAGCATTTCGAACATCACCCTTGTTTCGATTTGATTGGTTTGTTAAGTCTCGCACAACTCAGGAACTGGCTAGGAGGTGTGACACCCTCATTCGACTGGTAGAAAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCCAAAAGCATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGATAGTCCATCTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGATGATTATGCAAGCACGGCTTGCCTTCCAAAAGCAGTGCTACCAACATCTTTGACTTATGTAGGCTCGAAATATCAGTTGTATGACTAG 3282 0.4317 MARPSKPHSSSDEALSNASSSSEEEEQVNEQINEEEDEEELEAVARPASSDDDDDDDEVAGDNPPDSDEDPAAADDADDDQGGDNVDPEISKREKAKLKEMQKMKKQKIQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKKSRGRGRHASNFTEEEEDEEYLKGEEDGVANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPEERRHIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENRFDIKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLTELYEKEVRYLMQTHQKNQIKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALARQTDSPSSLKKRKQLTMDDYASTACLPKAVLPTSLTYVGSKYQLYD 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00524 1093 MobiDBLite consensus disorder prediction 27 42 - -
Pumo2g00524 1093 Pfam Helicase conserved C-terminal domain 503 615 IPR001650 -
Pumo2g00524 1093 Pfam SNF2-related domain 213 480 IPR000330 GO:0005524|GO:0140658
Pumo2g00524 1093 FunFam ISWI chromatin-remodeling complex ATPase CHR11 421 713 - -
Pumo2g00524 1093 MobiDBLite consensus disorder prediction 759 784 - -
Pumo2g00524 1093 Coils Coil 15 42 - -
Pumo2g00524 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 698 IPR027417 -
Pumo2g00524 1093 MobiDBLite consensus disorder prediction 1 103 - -
Pumo2g00524 1093 Gene3D ISWI, HAND domain 752 850 IPR036306 GO:0003677|GO:0006338|GO:0031491
Pumo2g00524 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 415 IPR027417 -
Pumo2g00524 1093 Gene3D iswi atpase 906 938 - -
Pumo2g00524 1093 Gene3D - 939 1042 - -
Pumo2g00524 1093 MobiDBLite consensus disorder prediction 1025 1059 - -
Pumo2g00524 1093 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 505 656 IPR001650 -
Pumo2g00524 1093 FunFam ISWI chromatin-remodeling complex ATPase CHR11 939 1042 - -
Pumo2g00524 1093 CDD SF2_C_SNF 501 626 - -
Pumo2g00524 1093 Gene3D - 421 713 IPR027417 -
Pumo2g00524 1093 MobiDBLite consensus disorder prediction 9 26 - -
Pumo2g00524 1093 ProSiteProfiles SANT domain profile. 850 902 IPR017884 -
Pumo2g00524 1093 Coils Coil 1008 1035 - -
Pumo2g00524 1093 FunFam ISWI chromatin-remodeling complex ATPase CHR11 752 850 - -
Pumo2g00524 1093 Pfam SLIDE 908 1018 IPR015195 GO:0003677|GO:0005634|GO:0006338
Pumo2g00524 1093 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 851 905 - -
Pumo2g00524 1093 MobiDBLite consensus disorder prediction 85 103 - -
Pumo2g00524 1093 Coils Coil 91 118 - -
Pumo2g00524 1093 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 97 1061 - -
Pumo2g00524 1093 MobiDBLite consensus disorder prediction 1025 1039 - -
Pumo2g00524 1093 SUPERFAMILY Homeodomain-like 906 1028 IPR009057 -
Pumo2g00524 1093 FunFam Chromatin-remodeling complex ATPase 201 416 - -
Pumo2g00524 1093 Gene3D - 201 416 IPR038718 -
Pumo2g00524 1093 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 763 853 IPR036306 GO:0003677|GO:0006338|GO:0031491
Pumo2g00524 1093 Gene3D - 851 905 - -
Pumo2g00524 1093 MobiDBLite consensus disorder prediction 151 169 - -
Pumo2g00524 1093 MobiDBLite consensus disorder prediction 49 84 - -
Pumo2g00524 1093 MobiDBLite consensus disorder prediction 146 178 - -
Pumo2g00524 1093 Pfam HAND 764 846 IPR015194 GO:0003677|GO:0006338|GO:0031491
Pumo2g00524 1093 SMART sant 953 1014 IPR001005 -
Pumo2g00524 1093 SMART sant 851 900 IPR001005 -
Pumo2g00524 1093 CDD SANT 854 898 IPR001005 -
Pumo2g00524 1093 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 377 IPR014001 -
Pumo2g00524 1093 CDD DEXHc_SMARCA1_SMARCA5 197 417 IPR044754 GO:0005524
Pumo2g00524 1093 SUPERFAMILY Homeodomain-like 854 904 IPR009057 -
Pumo2g00524 1093 SMART helicmild6 531 615 IPR001650 -
Pumo2g00524 1093 SMART ultradead3 196 388 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00524 Pumo-Chr2 8267880 8276488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00524 221 642 RAD5 or RAD16-like Gene Family AT1G02670 27.129 1.12e-41 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo2g00524 SNF2_N 7.5e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00524 K11654 - gmx:100809750 1952.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00524 2 8267880 8276488 Pumo2g00524 2 8267880 8276488 ECH
Pumo4g00328 4 4641904 4651428 Pumo2g00524 2 8267880 8276488 PCT