Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00519 ATGGAAGGTTCTGTCCTTGAACGTCTTGATTTTGGGAAGATGGGATACGGGTGCAAGCATTACAGAAGAAGATGCAAGATTAGAGCACCATGTTGCAATGAGGTCTACTCTTGTCGTCATTGTCATAACGAAGCAACGAGCATGCTGAGCAAACCTTTTGATCGTCACGACCTCATTCGCCAGGATGTTCAACAAGTTGTTTGTTCAGTTTGTGACACAGAGCAGCCAGTTACTCAAGTTTGCACAAACTGTGGTGTTAGAATGGGAGAATATTTCTGCAACATCTGCAAATTCTTCGATGATGATATCAGGAAACTACATTTTCATTGTGATGATTGTGGGATTTGCAGAGTTGGTGGTCGTGAGAATTTTTTCCACTGCAATAAGTGTGGGACTTGCTATTCAACTACTCTGCGTGATAATCATATGTGTGTGGAGAACTCCATGAGGCATCATTGTTCAATTTGTTATGAGTATCTTTTTGACTCATTAAAAGACACTGTTGTTATGAAATGTGGTCACACGATGCATAGTGAATGTCACCTAGAGATGATAAAGCGTGACAAGTATTGTTGTCCCATATGCTCCAAGTCGGTGATTGACATGTCTAGGACATGGAAGATAATTGATGAAGAGATTGAAGAAACTGTCATGCCTGATGATTATCGGTACAGAAAGTTAAAACTTGGTGGTTTTACTTTTACGATCATGCGATTACTTGACATGGTTAAGTTTTGCTGCTTCTGCAATGTTCTATCAACGGATACTCAAGTTGCAACAGCTATATGGGTTCTGTTTGAATTGCTTGAGTACCATATCCTCACTTTGGTTTGCCACTTCCTGATACTTGCTCTGGCGGCGTTGTTCCCGTGGTCAAATGCATCCACTTTCATCAAAAAGAGTCCATCGAAAATCCCACAACAAGTGCACATTCCGGAGGAACCTATTTTAGAATTTGCCTCTGCTCTTAGAATAGAGATCAATCGGGCTTTTGCAGTGTTAAGGGATATTGCATCTAGAAGGGAACTCAAGAAGTTCCTATCAAGATGTCTCCGCATGAAGGGACTTCATTGA 1074 0.4106 MEGSVLERLDFGKMGYGCKHYRRRCKIRAPCCNEVYSCRHCHNEATSMLSKPFDRHDLIRQDVQQVVCSVCDTEQPVTQVCTNCGVRMGEYFCNICKFFDDDIRKLHFHCDDCGICRVGGRENFFHCNKCGTCYSTTLRDNHMCVENSMRHHCSICYEYLFDSLKDTVVMKCGHTMHSECHLEMIKRDKYCCPICSKSVIDMSRTWKIIDEEIEETVMPDDYRYRKLKLGGFTFTIMRLLDMVKFCCFCNVLSTDTQVATAIWVLFELLEYHILTLVCHFLILALAALFPWSNASTFIKKSPSKIPQQVHIPEEPILEFASALRIEINRAFAVLRDIASRRELKKFLSRCLRMKGLH 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00519 357 ProSiteProfiles Reticulon domain profile. 218 347 IPR003388 -
Pumo2g00519 357 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Pumo2g00519 357 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
Pumo2g00519 357 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Pumo2g00519 357 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Pumo2g00519 357 Pfam Reticulon 258 348 IPR003388 -
Pumo2g00519 357 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 13 232 - -
Pumo2g00519 357 SMART ring_2 153 195 IPR001841 -
Pumo2g00519 357 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Pumo2g00519 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 227 IPR013083 -
Pumo2g00519 357 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Pumo2g00519 357 SUPERFAMILY RING/U-box 152 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00519 Pumo-Chr2 8238704 8247576 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00519 10 225 C2H2 Transcription Factor Family AT3G18290 37.557 3.51e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00519 K10144 - gmx:100812246 455.292