Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00508 ATGGGCCTAATCAGAAGCATGAGATCGCGGTCGCACCGTGTGGTGCAGGAGCAAGAAGAGTGTGTCGGCGACAGCATGCGACAGAGCTGTTGGGCCAACATGCCCCAAGAGCTTCTCCGAGAGGTCCTCCTCCGAATCGAGGCTTCCGAGGACACGTGGCCGCCGCGGAAGAGTGTCGTCGCCTGCGCCGGCGTTTGCCGCAGCTGGAGACAAATCACCAAAGACATTGTCAAAACACCCGAACTTTCCTCCAAGATCACCTTCCCCATTTCTGTTAAACAGCCTGGCCCAAGGGAGAATCTCCTTCGGTGCTTTATAAAGCGCAACCGGTCCACTCAAACCTACTATTTGTTTCTCAGTTTAACCAGTACGCTAGCTGAAGATGGGAAGTTCCTTCTGGCAGCACGCAAATGCAGACGTCCAACCTGCACAGATTATATCATCTCTCTTGATGCAGATGATATGTCAAAGGGAAGCAACTCCTATGTTGGGAAACTAAGATCAAATTTTCTTGGAACCAAGTTCACAATCTATGATGGCCAGCCGCCTCATGCAGGAGCAAAGATTATGAAAAGCCGCTCCACAAGGCTGGTGAATCTAAAACAAGTTTCACCCAAGGTCCCTACAGGCAACTATCCAGTGGCCCACATCTCATATGAATTGAATGTGCTAGGCTCCAGGGGGCCTAGGAGAATGCATTGTGTCATGGATTCCATTCCTGCCTCTGCAATTGAACCTGGTGGTGTAGCACCTACACAGACCGAGTTTTCTCTTAACAACATAGACATGTTTCCTTCATTCTCCTTTTTTCGATCAAAATCAAATCGTGTGGAAAATTCCGTGTCTGGACCATTGGTTGATCAAAAGGATGGGATGCTAGTGTTGAAAAACAAGGCCCCTAGGTGGCACGAGCAGCTGCAGTGTTGGTGCTTAAACTTCCATGGACGGGTGACAATTGCATCGGTTAAAACTTTCAGCTGGTGGCTTCTGCAGAAAATGGACCTGCTGGACCAGAACATGATAAGATCATCCTCCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGGTACCCTATTTCGGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGACATGTTTAAACAGGGACCATTCAGTTTCTGGGATCACAATTCACCAGCTCTTGGGAAAAAGATAACGTGA 1221 0.4799 MGLIRSMRSRSHRVVQEQEECVGDSMRQSCWANMPQELLREVLLRIEASEDTWPPRKSVVACAGVCRSWRQITKDIVKTPELSSKITFPISVKQPGPRENLLRCFIKRNRSTQTYYLFLSLTSTLAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNSYVGKLRSNFLGTKFTIYDGQPPHAGAKIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPASAIEPGGVAPTQTEFSLNNIDMFPSFSFFRSKSNRVENSVSGPLVDQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKTFSWWLLQKMDLLDQNMIRSSSNLEKLGRICLQWITGTLFRHFRHLQSASAALIPRLLVNDMFKQGPFSFWDHNSPALGKKIT 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00508 406 Gene3D Tubby Protein; Chain A 91 353 IPR025659 -
Pumo2g00508 406 SUPERFAMILY Tubby C-terminal domain-like 80 326 IPR025659 -
Pumo2g00508 406 Pfam Tub family 92 326 IPR000007 -
Pumo2g00508 406 Pfam F-box domain 31 78 IPR001810 GO:0005515
Pumo2g00508 406 PRINTS Tubby superfamily signature 313 329 IPR000007 -
Pumo2g00508 406 PRINTS Tubby superfamily signature 162 186 IPR000007 -
Pumo2g00508 406 PRINTS Tubby superfamily signature 211 238 IPR000007 -
Pumo2g00508 406 PRINTS Tubby superfamily signature 146 162 IPR000007 -
Pumo2g00508 406 PRINTS Tubby superfamily signature 295 312 IPR000007 -
Pumo2g00508 406 CDD F-box_AtTLP-like 31 75 - -
Pumo2g00508 406 PANTHER TUBBY-RELATED 16 329 - -
Pumo2g00508 406 SUPERFAMILY F-box domain 26 75 IPR036047 GO:0005515
Pumo2g00508 406 Gene3D - 24 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00508 Pumo-Chr2 8144403 8148885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00508 8 325 TUB Transcription Factor Family AT2G47900 71.340 3.16e-163 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pumo2g00508 Tub 2e-80 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00508 K19600 - gmx:100815464 627.861