Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00493 ATGGAACCCCAATCTCTACCTCCTCCTCCCCCCAACATGGACGACGCCGAAGACCCTTCCTCCATTTGGGACTTCTCTTACCTCCTCGATTTCAACCTCGACGACGAAGATATCATTAATAACAATAACTCTCTCCCTCTTCCCTTAAACGACGACGACGACGCCGCCCCCGAGATCCCTCAAAACGACAGGGTCCGAAAGCGCGACCCGAGGCTCACCTGCTCCAACTTCCTCGCGGGTCAGGTCCCCTGCGCCTGCCCCGAACTCGACGCCAAGCTCGAGGACGAGGGTTTGCCCGGCAAGAAACGCGCCCGCACCGCGCGTGCATCTGCTGCATCCGCTCGCTGCCAGGTCCCTGGCTGCGAGGTCGATATCTCCGAGCTCAAAGGTTACCACCGCCGACACAGGGTTTGCTTGCGCTGCGCGAATGCCACCACCGTTATGCTCCACGGCGAGGCCAAGAGATACTGCCAACAGTGCGGAAAGTTTCACGTCTTGTCGGATTTCGACGAAGGGAAACGCAGCTGTAGAAGGAAATTAGAGCGCCATAACACCAGAAGGCGAAGAAAGCCTCCAGCGGATTCAAGAGGTGCTGCTCATAGTGAAGTTGAACCTGTTACTCAAAACGAGGAAAACAACAATTATGATGCGGAAGCAGGAAAAGATTGTTCAAATTTGAGTGCCGAGATCAACGACATAGGAGTGTCTCCAGATCATGAAGATGAACCGGTTCCCATTCCCAGCTCGGCTCCTGAAGCTCAGAATATTAATAGTGATAGTGTTGTGTCTTTGGCTGTTTCTGGTGAAACGCGAGTGAATAGTGGGAACACTTCTAATTCGCCTTCATATTGTGACAATAAGAGTGCCTATTCGTCTATGTGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACACCAAATATTCCAATGGTTGGCAAGTATGCCTGTAGAGTTGGAGGGATATATCCGCCCTGGGTGTACAATCCTGACAATTTTTATTGCAATGCCTAACTTTATGTGGATAAATTTACTGAAAGACTCTTTGGAATTTGTGTGTGATCTTGTTGCTCCTGGAAAGGTTCTATCTGGAAGAGGCACCAGACTAGTTCATCTGAATGACATGATCTTCCATGTTATGAAAGATGGAACTTCTGTGACGAAAGTCGAGGTAAGCATGCAGGCACCGAGGCTTCACTACGTTCATCCCACATGCTTTGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTAATGCAGCCTAAGTTTCGGCTTCTTGTATCGTTTTCTGGAAAGTATCTGAAATGTGAGTATTGTGTACCGTCTCCACATAACTGGGCTGAAGACAATATTTCTTGTGCTTTTGACAATCAGTTATACAAGATATATGTCCCTCATACCGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAATCTGGTTTATCAAACTTTATTCCTGTACTCATTGGGGATAAAGAAATTTGTACTGAAATGAAGACACTGCAGCAAAAATTAGATGTATCTCTCATTTCTAAACAATTCCGGTCTGCATCTGGTGGTTCTATCTGCAGCTCATGCGAAACTTTTGCACTTAGTCACACATCATCATCAGACTTACTTGTAGATATAGCATGGTTGCTTAAGGACACCACTTCAGAAAATTTTGACAGAGTGATGACAGCTTCACAAATTCAAAGATTTTGTCATTTGTTGGATTTTTTGATATGCAATGATTCAACAATCATTTTGGAAAAAATATTACCAAATTTGATAATCTTGACAGAAAGTATGAAATCCAATGTTGTGATTAATAGGACGAGTGATGCTGACATAACGCAACTCCTCAATCACATATATAAAGCTAGAAATGCCATATGTCAGAAACATCTGAAAAGTGGAAGTATAATTGTGCACTCTGAAATGGAAGGCTTTAAACTTGCTCAGGGATGCTCCCAAGATAACAAGCTATCAGTTGCAGTCAACATTCAGGGTATCCTGTCGAGAGCAGATGCGAAGTGGGGAGTACTGAAAAGTTCAACTTGTAATGACAAAAATGAAAGAATACCACTTTTGAAGAGGGATATTATAATGAATGTGGATGAATTGCATGGAAGATATGGGCGTCGATGTTTGGGGAGGGGATTCTTGACCTCTCGACCAGCTATTTTTGTGATTGTTTCGGTTGCTGTTTGTCTTGGGGTTTGTGTAGCCGTCCTTCATCCTGGTAGGGTTAGTGAGTTGGCAGTATCTGTTAGAAGGTGCTTGTTTAACTATTAG 2331 0.447 MEPQSLPPPPPNMDDAEDPSSIWDFSYLLDFNLDDEDIINNNNSLPLPLNDDDDAAPEIPQNDRVRKRDPRLTCSNFLAGQVPCACPELDAKLEDEGLPGKKRARTARASAASARCQVPGCEVDISELKGYHRRHRVCLRCANATTVMLHGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPPADSRGAAHSEVEPVTQNEENNNYDAEAGKDCSNLSAEINDIGVSPDHEDEPVPIPSSAPEAQNINSDSVVSLAVSGETRVNSGNTSNSPSYCDNKSAYSSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTIFIAMPNFMWINLLKDSLEFVCDLVAPGKVLSGRGTRLVHLNDMIFHVMKDGTSVTKVEVSMQAPRLHYVHPTCFEAGKPMEFVACGSNLMQPKFRLLVSFSGKYLKCEYCVPSPHNWAEDNISCAFDNQLYKIYVPHTEESLFGPAFIEVENESGLSNFIPVLIGDKEICTEMKTLQQKLDVSLISKQFRSASGGSICSSCETFALSHTSSSDLLVDIAWLLKDTTSENFDRVMTASQIQRFCHLLDFLICNDSTIILEKILPNLIILTESMKSNVVINRTSDADITQLLNHIYKARNAICQKHLKSGSIIVHSEMEGFKLAQGCSQDNKLSVAVNIQGILSRADAKWGVLKSSTCNDKNERIPLLKRDIIMNVDELHGRYGRRCLGRGFLTSRPAIFVIVSVAVCLGVCVAVLHPGRVSELAVSVRRCLFNY 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00493 776 MobiDBLite consensus disorder prediction 1 15 - -
Pumo2g00493 776 MobiDBLite consensus disorder prediction 1 20 - -
Pumo2g00493 776 Pfam SBP domain 116 190 IPR004333 GO:0003677
Pumo2g00493 776 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 78 591 IPR044817 GO:0003677
Pumo2g00493 776 Gene3D - 111 177 IPR036893 GO:0003677|GO:0005634
Pumo2g00493 776 MobiDBLite consensus disorder prediction 205 220 - -
Pumo2g00493 776 SUPERFAMILY SBT domain 114 192 IPR036893 GO:0003677|GO:0005634
Pumo2g00493 776 ProSiteProfiles Zinc finger SBP-type profile. 113 190 IPR004333 GO:0003677
Pumo2g00493 776 MobiDBLite consensus disorder prediction 235 254 - -
Pumo2g00493 776 MobiDBLite consensus disorder prediction 180 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00493 Pumo-Chr2 7978403 7988264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00493 7 770 SBP-box Gene Family AT5G18830 45.949 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo2g00493 SBP 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00493 - - gmx:100819905 1338.94