Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00487 ATGGGCCTAATCAGAAGCATGAGATCGCGGTCGCACCGTGTGGTGCAGGAGCAAGAAGAGTGTGTCGGCGACAGCATGCGACAGAGCTGTTGGGCCAACATGCCCCAAGAGCTTCTCCGAGAGGTCCTCCTCCGAATCGAGGCTTCCGAGGACACGTGGCCGCCGCGGAAGAGTGTCGTCGCCTGCGCCGGCGTTTGCCGCAGCTGGAGACAAATCACCAAAGACATTGTCAAAACACCCGAACTTTCCTCCAAGATCACCTTCCCCATTTCTGTTAAACAGCCTGGCCCAAGGGAGAATCTCCTTCGGTGCTTTATAAAGCGCAACCGGTCCACTCAAACCTACTATTTGTTTCTCAGTTTAACCAGTACGCTAGCTGAAGATGGGAAGTTCCTTCTGGCAGCACGCAAATGCAGACGTCCAACCTGCACAGATTATATCATCTCTCTTGATGCAGATGATATGTCAAAGGGAAGCAACTCCTATGTTGGGAAACTAAGATCAAATTTTCTTGGAACCAAGTTCACAATCTATGATGGCCAGCCGCCTCATGCAGGAGCAAAGATTATGAAAAGCCGCTCCACAAGGCTGGTGAATCTAAAACAAGTTTCACCGAAGGTCCCTACAGGCAACTATCCAGTGGCCCACATCTCATATGAATTGAATGTGCTAGGCTCCAGGGGGCCTAGGAGAATGCATTGTGTCATGGATTCCATTCCTGCCTCTGCAATTGAACCTGGTGGTGTAGCACCTACACAGACCGAGTTTTCTCTTAACAACATAGACATGTTTCCTTCATTCTCCTTTTTTCGATCAAAATCAAATCGTGTGGAAAATTCCGTGTCTGGACCATTGGTTGATCAAAAGGATGGGATGCTAGTGTTGAAAAACAAGGCCCCTAGGTGGCACGAGCAGCTGCAGTGTTGGTGCTTAAACTTCCATGGACGGGTGACAATTGCATCGGTTAAAAACTTTCAGCTGGTGGCTTCTGCAGAAAATGGACCTGCTGGACCAGAACATGATAAGATCATCCTCCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGGTACCCTATTTCGGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGA 1152 0.4835 MGLIRSMRSRSHRVVQEQEECVGDSMRQSCWANMPQELLREVLLRIEASEDTWPPRKSVVACAGVCRSWRQITKDIVKTPELSSKITFPISVKQPGPRENLLRCFIKRNRSTQTYYLFLSLTSTLAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNSYVGKLRSNFLGTKFTIYDGQPPHAGAKIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPASAIEPGGVAPTQTEFSLNNIDMFPSFSFFRSKSNRVENSVSGPLVDQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00487 383 FunFam Tubby-like F-box protein 88 383 - -
Pumo2g00487 383 Pfam F-box domain 31 78 IPR001810 GO:0005515
Pumo2g00487 383 PANTHER TUBBY-RELATED 16 381 - -
Pumo2g00487 383 ProSitePatterns Tub family signature 1. 313 326 IPR018066 -
Pumo2g00487 383 Gene3D Tubby Protein; Chain A 88 383 IPR025659 -
Pumo2g00487 383 Pfam Tub family 92 378 IPR000007 -
Pumo2g00487 383 CDD F-box_AtTLP-like 31 75 - -
Pumo2g00487 383 Gene3D - 24 84 - -
Pumo2g00487 383 SUPERFAMILY F-box domain 26 75 IPR036047 GO:0005515
Pumo2g00487 383 ProSitePatterns Tub family signature 2. 368 383 IPR018066 -
Pumo2g00487 383 PRINTS Tubby superfamily signature 313 329 IPR000007 -
Pumo2g00487 383 PRINTS Tubby superfamily signature 162 186 IPR000007 -
Pumo2g00487 383 PRINTS Tubby superfamily signature 211 238 IPR000007 -
Pumo2g00487 383 PRINTS Tubby superfamily signature 295 312 IPR000007 -
Pumo2g00487 383 PRINTS Tubby superfamily signature 340 359 IPR000007 -
Pumo2g00487 383 PRINTS Tubby superfamily signature 361 383 IPR000007 -
Pumo2g00487 383 PRINTS Tubby superfamily signature 146 162 IPR000007 -
Pumo2g00487 383 SUPERFAMILY Tubby C-terminal domain-like 80 383 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00487 Pumo-Chr2 7907048 7912291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00487 8 383 TUB Transcription Factor Family AT2G47900 73.879 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pumo2g00487 Tub 1.7e-113 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00487 K19600 - gmx:100778346 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00487 2 7907048 7912291 Pumo2g00487 2 7907048 7912291 ECH
Pumo4g00317 4 4545912 4549050 Pumo2g00487 2 7907048 7912291 PCT