Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00478 ATGCAAGCACCTCAAGCATCACCCACTGATGAAGCCTCTGAGATTTCCCATCAGGCTGTCCCCCTGCGAAACAAAGAAGTTTCAGATAGTGGACCCAGTGGTAGGCGCCCTGATATTTCACTTCAAGTTCCCCCTAGACCTATAGGGTTTGGCAGCACTAGTGGTGGAAGGGTTCTGGACCATTCTCAAAGTTTTGGTAAAGGGATTTCATCATCAAGAGGCTTCTTGCGGGCCTTGAGCTTCAAAAGAAAAGGAAATGTAGCAGATGGCGAAAGAAGTAGCCTCCTTAATTCAGATCCCAAGACAGCTGCAGACGGTCCTAATATGGCCTCCATATCTGAAATTGCATGGAAAAGATGTACTTCTCTTCCTGTTACACCTGCATCAAATCTGTCTCCTTCAGTGTCTACACCCATTTCTGCAAGGACATATAATGAACAGACTAAGCCTCATAAAGATGTTGATCGTTCTAAGGTTTCAAGGTCCCTTTCCGTACCTGGGCGAAATGTCGTTATTGTAAGATCTGTCTCTTTTTCTACCCGTAGTGAACAGGAGCAACAAGATTCAAATGATGATCAAATAACTCCTGTGCCAGTAGAAGAAGTTACTGCTGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTTTTGATGAGTGTGATGAAAGGAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATTAAATGGTTTAGCACAAAAGGAGATAAGAAATGTGATGTATGTAGGCAAGAGGTTCAGAATTTACCTGTAACTTTGCTTCGTGTCACCAGCTCTGTTCAACGACAAAACAGACTGCTGCAAGGTCAGCAGAACCTACATCCAGAGTCAATAAGCGCTTGGCAAGACTTCGTGGTGCTTGTCCTGATCAGCACGATATGCTACTTTTTCTTCCTTGAACAGCTACTGCTTCCTGAATTGAAGACTCAAGCAATTATTATAGCAGCACCATTTGCCTTTACCTTGGGCCTCCTAGCTTCTATTTTTGCAGTCATCCTGGCAATTAAAGAGTATATATGGACATATGCTGCTCTCGAGTTTGCCCTTGTAGCTTTAACCGTGCATCTATTTTATACTATGCTGCATTTGACAGCCATATATGCCATACTACTTTCAGCAGTTTTGGGTTTTGGAATTGCTATGGGCATCAACTACGCATATATCCAGTTTGTCACTTGGAGACTTCAGGTCTCTCATGATGATAGCCCAGTATGA 1272 0.4292 MQAPQASPTDEASEISHQAVPLRNKEVSDSGPSGRRPDISLQVPPRPIGFGSTSGGRVLDHSQSFGKGISSSRGFLRALSFKRKGNVADGERSSLLNSDPKTAADGPNMASISEIAWKRCTSLPVTPASNLSPSVSTPISARTYNEQTKPHKDVDRSKVSRSLSVPGRNVVIVRSVSFSTRSEQEQQDSNDDQITPVPVEEVTADEEIPEEEAVCRICFDECDERNTFKMECSCKGDLRLVHEECLIKWFSTKGDKKCDVCRQEVQNLPVTLLRVTSSVQRQNRLLQGQQNLHPESISAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVALTVHLFYTMLHLTAIYAILLSAVLGFGIAMGINYAYIQFVTWRLQVSHDDSPV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00478 423 Pfam RING-variant domain 215 261 IPR011016 GO:0008270
Pumo2g00478 423 MobiDBLite consensus disorder prediction 127 162 - -
Pumo2g00478 423 MobiDBLite consensus disorder prediction 86 107 - -
Pumo2g00478 423 ProSiteProfiles Zinc finger RING-CH-type profile. 207 268 IPR011016 GO:0008270
Pumo2g00478 423 ProSiteProfiles Zinc finger RING-type profile. 215 262 IPR001841 -
Pumo2g00478 423 SMART ringv_2 214 262 IPR011016 GO:0008270
Pumo2g00478 423 MobiDBLite consensus disorder prediction 127 145 - -
Pumo2g00478 423 MobiDBLite consensus disorder prediction 1 70 - -
Pumo2g00478 423 CDD RING_CH-C4HC3_MARCH 215 262 - -
Pumo2g00478 423 SUPERFAMILY RING/U-box 211 265 - -
Pumo2g00478 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 270 IPR013083 -
Pumo2g00478 423 MobiDBLite consensus disorder prediction 56 70 - -
Pumo2g00478 423 PANTHER OS02G0165000 PROTEIN 61 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00478 Pumo-Chr2 7785234 7792528 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00478 152 322 C3H Transcription Factor Family AT2G37950 26.882 3.55e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00478 - - gmx:100527094 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00478 2 7785234 7792528 Pumo2g00478 2 7785234 7792528 ECH