Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00454 ATGGGTTGTGTCCATGGCAAGTGCTGTACCCGTTACCCTTCACCTTCAGTGAGTGGCTCTAGAGACTTCAGAGAACTTGGCCCTTACTCTGCCCAAAGAAAGCACATTCTCACCCAGAGTTCACTGCAATTTGTTCCTGTCCCTTCCCATAACTTCACTTTGGAATACTCTGTGCTCACTCAGAGGGGGTACTATCCTGATTCACCTGATAAGGAAAACCAAGATAGTTTTAGCATTAGGACACAGTTTCAAGGTAACCCCAGTGTCCATTTCTTTGGTGTCTATGATGGGCATGGCGAATTTGGTAGCCAGTGTTCAAACTTTGTTAAGGATAGGTTGGTGGAAAATTTGTCTAGTGACATTGCATTGTTGGAGGACCCTGTTAAGGCCTACACTTCTGCATTCTTGACCACAAATGATGACTTGCATAAGAATGAGATTGATGATTCTTTGAGTGGCACCACTGCAATTACGGTGCTGGTTATTGGGAACACCCTTTATGTTGCTAATGTTGGTGATTCTAGAGCAGTGCTGGCTGTTAAGGATGGGAACCGGGTTGTTGCTGAGGACTTGTCCTCTGATCAGACACCATTTAGGAGAGATGAGTATGAGAGAGTGAAGCTTTGTGGGGCAAGGGTGTTGAGTGTTGATCAGGTTGAGGGGCATAAGGATCCGGATATTCAAACTTGGGGTGATGAAGAGAGTCAGGGTGATGATCCTCCTAGGTTGTGGGTTCAGGATGGGATGGTTCCTGGAGCTGCTTTTACAAGAAGTGTAGGGGATAAATTGGCTGAGACTATTGGTGTCATTGCTGTTCCAGAGGTGTCAACGGTTCAGCTTACACCTAATCATCTTTTCTTTGTTGTTGCAAGTGATGGTGTATTTGAGTTCCTATCCAGCCAAACTGTTGTTGATATGGCAGCAAGTTATTCAGATCCCCGCGATGCATGTGCTGCCATTGCTGGAGAGTCTTATAAACTATGGTTAGAACATGAGGGTCGAACAGATGATATAACAATTATCATTGTTCAGATCAAAGGCCTTTCTAATTCAGCTACATCTGGATTTGGATCCGGTGAGATCAATGTCAGTACTGTAACGAGGACAAAGAGCAAGAGGGTAAAGGGAGCATCTGAAATATCTGCCACTACTGGGTTAGATGTGTATCGTTCAGTCAGGAATGGTTTCTCTGATTTACAGTCCTGTCCACAGCATGTGGTCTCAACTAGAAGCCCAGCCATAGTGGTCCCCTCTCCAGCATGTCAAACACCAATTGAATTGGTACAGTCACACTAG 1296 0.4506 MGCVHGKCCTRYPSPSVSGSRDFRELGPYSAQRKHILTQSSLQFVPVPSHNFTLEYSVLTQRGYYPDSPDKENQDSFSIRTQFQGNPSVHFFGVYDGHGEFGSQCSNFVKDRLVENLSSDIALLEDPVKAYTSAFLTTNDDLHKNEIDDSLSGTTAITVLVIGNTLYVANVGDSRAVLAVKDGNRVVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGHKDPDIQTWGDEESQGDDPPRLWVQDGMVPGAAFTRSVGDKLAETIGVIAVPEVSTVQLTPNHLFFVVASDGVFEFLSSQTVVDMAASYSDPRDACAAIAGESYKLWLEHEGRTDDITIIIVQIKGLSNSATSGFGSGEINVSTVTRTKSKRVKGASEISATTGLDVYRSVRNGFSDLQSCPQHVVSTRSPAIVVPSPACQTPIELVQSH 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00454 431 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Pumo2g00454 431 Gene3D - 47 347 IPR036457 -
Pumo2g00454 431 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Pumo2g00454 431 SMART PP2C_4 51 343 IPR001932 -
Pumo2g00454 431 CDD PP2Cc 71 345 IPR001932 -
Pumo2g00454 431 SUPERFAMILY PP2C-like 44 347 IPR036457 -
Pumo2g00454 431 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 347 - -
Pumo2g00454 431 Pfam Protein phosphatase 2C 79 320 IPR001932 -
Pumo2g00454 431 PANTHER PROTEIN PHOSPHATASE 71 344 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00454 Pumo-Chr2 7549880 7554100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00454 1 350 PP2C-type Phosphatase Gene Family AT3G06270 71.671 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00454 - - gsj:114373061 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00454 2 7549880 7554100 Pumo2g00454 2 7549880 7554100 ECH
Pumo4g00284 4 4206081 4209824 Pumo2g00454 2 7549880 7554100 PCT