Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00438 ATGGAACAGCTTGTCAACTTCATCATTCGGCCACCCAGAGCTGAATATGATCCAAAAAGTGATTTATTGGATCATGAGTTCATGCTAAAAGGGAAATGGTTTCAACGGAAGGACGTGGAGATAAAAAACAGCCGTGGGGATGTTCTTCAATGCAGTCATTACATGCCTATAGTCAGTCCTGATGGAAAGCCTCTGCCATGTGTAATATATTGCCATGGAAACAGTGGATGCAGGGTTGATGCCAGTGAAGCTGCTCTAATTTTACTTCCTTCAAATATTACAGTTTTTACTCTGGATTTCTCAGGATCGGGAATCTCTGGAGGAGAGCATGTCACTCTTGGTTGGAATGAAAAGGATGATCTGAGGGCAGTGGTCAACTATCTGCGGGCAGATGGAAATGTCTCTCTGATTGGCTTATGGGGACGCTCAATGGGTGCTGTGACTAGCCTTATGTATGGAGCTGGGGATCCTTCAATTGCAGGAATGGTTTTAGACAGTCCCTTCTCTGATTTGGTTGATTTAATGATGGAACTTGTAGATACATATAGAGTCCGTCTGCCAAAATTCACTGTGAAGTTTGCAATTCAATACATGCGAAAAACAATCCTGAAGAAGGCAAAATTTGACATAACGGACTTGAACACCGTTAAGGTAGCAAAATCTTGTTTTGTTCCTGCTCTACTAGGGCATGCCATTGATGATGATTTTATTCGTCCTCATCACTCAGATCGTATACTTGAGGCTTACATGGGAGACAAAAACGTAATTAAATTTGAGGGAGATCACAACTCTTCGCGTCCTCGGTATTATTTTGATTCCGTAAACATCTTTTTTCACGATGTTTTACAACCTCCAGAAGATGAGCTTGGGGAATCATTTTTTGACATTATGAGTGATTACTTTGGTAAGGATGTCTGGAGATCTGTGCATGAATTTGACTTTGGCAATGAACCATCATTTCGAAACAAAGAATCATCAACAAGCAGTACTGTGGATGACATTACGCAAGTTCGTTCAAAAAGACCAATGAGTAGGATGGAGGTTCCATCACATACTTTTTCAAAAGATGGACGTCGTGACAGTGAGGCACAGAAATGTGATGATCTTTCCTCATCATCTTCTACAATGATTAGTTTTGAATTATCAAATGGTCGTCTCTATAGTCCCCTCGTTCCAACCGATCTAGATGATGACCACTATGTGGAATATCAACTTGATGACTTTACAGGCCGTCCATCTAGTGCAAAGAAAGAACAAAAAATGTTCATGGAAGCAGTGATAGATTCATTGAAAGACATTGAAATACGAATTCCAGAGGTAGAACAACCACCTGTTAGCAGTGCTAGTACCATGTCTACAGAGCCATTGGATAAGAATGACTCACATGCTTCTTCACATGAGATTTCCAAACCTATGGAGACAGAATCTTCTTTACTCAACCACAGTATTAAAACAATTTCCACTGCATCTGATGATGCATTGGAGCCCTTGAAAACTGAGTCAAATTCCATTTCAGTGATTCCAAGTCCAGTACCAAGTCTTTCATCAACACCATTGGACACTTCATGGGTTGCTGAGTCTGGCAATACAGAAATGTGGAGTGTGTGTAATCCATTCATTCCCATGGCTTCCGTTGCTTTCAGAAACCTAAATTCTAAGCGCCTCCTTTTCTCTTTGCATTTCACAAATGCTTACCATTCACTCTCTCGTGGAACTTGCACCACCATATTCCAAAACTACTGCAATGCACCTCCTTTGGATCTCGTTTCTCTACGGAGATCCTTGGCCACTTTTGCTCGAACAAAGCCCCACCTTAACGTGGGCACAATTGGGCATGTTGATCATGGGAAAACCACACTAACTGCTGCAATTACCAAGGTGCTATCTGAAGAAGGTAAAGCCAAGGCCATTGCCTTTGAGGACATAGACAAGGCTCCAGAGGAGAAGAAGAGAGGAATTACTATTGCTACTGCTCATGTAGAGTATGAGACAGCAAAGAGGCACTATGCGCATGTTGATTGCCCAGGACATGCAGACTATGTTAAGAACATGATAACTGGAGCTGCACAAATGGATGGTGGAATTCTTGTGGTTTCTGCTCCAGATGGGCCAATGCCTCAAACAAAGGAACATATACTGCTTGCTCGTCAGGTTGGTGTGCCATCATTGGTTTGCTTTCTAAACAAGGTTGATGCTGTTGATGATCCAGAGTTGCTTGAACTTGTGGAAATGGAGCTTCGTGAACTGCTTAATTTCTACAAATTTCCTGGGGATGAGATCCCAATTGTTCGAGGTTCAGCCCTGTCTGCATTGCAGGGGACTAATGAAGAACTTGGAAAGAAGGCTATCTTAAAACTAATGGATGCTGTGGATGAATACATTTCTGATCCTGTGCGGCAACTTAGACAAGCCTTTCTTAATGCCAATAGAAGATGTTTTCTCAATTCAGAGACTTCAGCTTTTAACACGGGGCGCGGAACTGTTGTGACTGGTCGTGTTGAACAAGGCACCATCAAAATAGGTGAGGAGGTTGAAGTATTGGGACTAACACAGAGTGGACCTTTGAAGACTACTGTAACTGGTGTGGAAATGTTCAAGAAAATTTTGGATCGAGGGGAAGCTGGTGATAATGTGGGACTTCTTCTACGTGGTCTGAAGCGTGATGATGTACAGCGAGGAATGGTTGTGACCAAGCCTGGTGCATTAAAAACGTATAAGAAGTTCGAAGCAGAGATTTATGTCCTCTCAAAGGATGAAGGTGGCCGTCATACTGCTTTTTTCTCTAACTATAAGCCGCAGTTTTACTTGAGGACTGCAGATGTTACCGGAAAGGTGGAATTACCCGAAAGTGTTAAGATGGTTATGCCTGGTGATAACGTGACTGCAACATTTGAGCTGATATCACCTGTTCCTCTTGAAATAGGACAAAGATTTGCTTTGAGAGAGGGAGGCAGAACAGTTGGTGCAGGAGTTGTCTCCAAAGTGATGGCCTAG 2994 0.4248 MEQLVNFIIRPPRAEYDPKSDLLDHEFMLKGKWFQRKDVEIKNSRGDVLQCSHYMPIVSPDGKPLPCVIYCHGNSGCRVDASEAALILLPSNITVFTLDFSGSGISGGEHVTLGWNEKDDLRAVVNYLRADGNVSLIGLWGRSMGAVTSLMYGAGDPSIAGMVLDSPFSDLVDLMMELVDTYRVRLPKFTVKFAIQYMRKTILKKAKFDITDLNTVKVAKSCFVPALLGHAIDDDFIRPHHSDRILEAYMGDKNVIKFEGDHNSSRPRYYFDSVNIFFHDVLQPPEDELGESFFDIMSDYFGKDVWRSVHEFDFGNEPSFRNKESSTSSTVDDITQVRSKRPMSRMEVPSHTFSKDGRRDSEAQKCDDLSSSSSTMISFELSNGRLYSPLVPTDLDDDHYVEYQLDDFTGRPSSAKKEQKMFMEAVIDSLKDIEIRIPEVEQPPVSSASTMSTEPLDKNDSHASSHEISKPMETESSLLNHSIKTISTASDDALEPLKTESNSISVIPSPVPSLSSTPLDTSWVAESGNTEMWSVCNPFIPMASVAFRNLNSKRLLFSLHFTNAYHSLSRGTCTTIFQNYCNAPPLDLVSLRRSLATFARTKPHLNVGTIGHVDHGKTTLTAAITKVLSEEGKAKAIAFEDIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLNFYKFPGDEIPIVRGSALSALQGTNEELGKKAILKLMDAVDEYISDPVRQLRQAFLNANRRCFLNSETSAFNTGRGTVVTGRVEQGTIKIGEEVEVLGLTQSGPLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKRDDVQRGMVVTKPGALKTYKKFEAEIYVLSKDEGGRHTAFFSNYKPQFYLRTADVTGKVELPESVKMVMPGDNVTATFELISPVPLEIGQRFALREGGRTVGAGVVSKVMA 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00438 997 MobiDBLite consensus disorder prediction 440 474 - -
Pumo2g00438 997 Hamap Elongation factor Tu [tuf]. 593 997 IPR004541 GO:0003746|GO:0005525|GO:0006414
Pumo2g00438 997 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 602 798 IPR000795 GO:0003924|GO:0005525
Pumo2g00438 997 Pfam Elongation factor Tu GTP binding domain 602 794 IPR000795 GO:0003924|GO:0005525
Pumo2g00438 997 Pfam Serine aminopeptidase, S33 64 175 IPR022742 -
Pumo2g00438 997 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 599 801 IPR027417 -
Pumo2g00438 997 SUPERFAMILY Translation proteins 813 902 IPR009000 -
Pumo2g00438 997 FunFam Elongation factor Tu 593 797 - -
Pumo2g00438 997 MobiDBLite consensus disorder prediction 443 458 - -
Pumo2g00438 997 CDD EFTU_II 823 900 IPR033720 -
Pumo2g00438 997 Pfam Elongation factor Tu domain 2 826 897 IPR004161 GO:0005525
Pumo2g00438 997 Gene3D Translation factors 941 996 - -
Pumo2g00438 997 Gene3D Translation factors 818 937 - -
Pumo2g00438 997 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 643 658 IPR031157 -
Pumo2g00438 997 PRINTS GTP-binding elongation factor signature 670 680 IPR000795 GO:0003924|GO:0005525
Pumo2g00438 997 PRINTS GTP-binding elongation factor signature 606 619 IPR000795 GO:0003924|GO:0005525
Pumo2g00438 997 PRINTS GTP-binding elongation factor signature 650 658 IPR000795 GO:0003924|GO:0005525
Pumo2g00438 997 PRINTS GTP-binding elongation factor signature 686 697 IPR000795 GO:0003924|GO:0005525
Pumo2g00438 997 PRINTS GTP-binding elongation factor signature 723 732 IPR000795 GO:0003924|GO:0005525
Pumo2g00438 997 NCBIfam elongation factor Tu 595 996 IPR004541 GO:0003746|GO:0005525|GO:0006414
Pumo2g00438 997 Pfam Elongation factor Tu C-terminal domain 902 995 IPR004160 -
Pumo2g00438 997 PANTHER ALPHA/BETA-HYDROLASE 2 473 - -
Pumo2g00438 997 CDD EF_Tu 603 797 IPR041709 -
Pumo2g00438 997 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 906 997 IPR009001 -
Pumo2g00438 997 FunFam Elongation factor Tu 808 937 - -
Pumo2g00438 997 MobiDBLite consensus disorder prediction 319 337 - -
Pumo2g00438 997 SUPERFAMILY alpha/beta-Hydrolases 19 286 IPR029058 -
Pumo2g00438 997 CDD EFTU_III 903 992 - -
Pumo2g00438 997 MobiDBLite consensus disorder prediction 351 366 - -
Pumo2g00438 997 Gene3D alpha/beta hydrolase 32 291 IPR029058 -
Pumo2g00438 997 MobiDBLite consensus disorder prediction 318 369 - -
Pumo2g00438 997 Gene3D - 594 797 IPR027417 -
Pumo2g00438 997 NCBIfam small GTP-binding protein domain 606 743 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00438 Pumo-Chr2 7290026 7305349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00438 598 995 Eukaryotic Initiation Factors Gene Family AT5G60390 28.153 9.48e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00438 - K02358 gmx:100815597 944.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00438 2 7290026 7305349 Pumo2g00438 2 7290026 7305349 ECH
Pumo4g00272 4 4011218 4023632 Pumo2g00438 2 7290026 7305349 PCT