Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00412 ATGAACAAACCCTCTAATTATACAACATTACTATCTTATACTTTGCCAAGGAAGAAGAAAAATGTAGGTTTGTTCCATCATTTCCTGATGCATTTCAGCCAGTCAGAATCCCCTTTCAGAAAGGAGTTGGGCCAGAAATTTGCTCAGCCTTCAGGAACAGGAATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTGGAGAAGATATCTTTCCTCTTGTAATATGTGCTGAAACAAGTTTAAAAACATCCTCAGAAGATGAAACTCCTGATGATTCCTTGCTAGATGCATCCCCTCACATGCAAATAACTCAAGGCGTCTTAGAGAAAAGTAATGGTGCTGGTCCTTTCCTAATAAAAGTAGTTAGGCAGATTTTGTGGATTGATGGTGTTCGTTATGAGTTGAGAGAGTTATATGGAATAGGAAGCTCATCCGCAGCTGATTTTGATGACAATGATCCTGGGAAGGAGTGTGTCATATGCATGACTGAACCAAAGGATACTGCAGTCTTACCTTGTCGACATATGTGTATGTGCAGTGAGTGTGCAAATGCTCTGCGACATCAATCCAACAAATGCCCTATATGCCGTCAGTCTATTGAGGAACTTATAGAGATCAGGGTGAACAATGGCGAAGGACCAGAAAATGCTGATGCTGAAAATGGGCTAACACTCGGTTTGGGAAATGGTAACCGCCGAGGCCTGAAGTGA 723 0.4205 MNKPSNYTTLLSYTLPRKKKNVGLFHHFLMHFSQSESPFRKELGQKFAQPSGTGIDLGFFELDDLSKPSPGEDIFPLVICAETSLKTSSEDETPDDSLLDASPHMQITQGVLEKSNGAGPFLIKVVRQILWIDGVRYELRELYGIGSSSAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECANALRHQSNKCPICRQSIEELIEIRVNNGEGPENADAENGLTLGLGNGNRRGLK 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00412 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 211 IPR013083 -
Pumo2g00412 240 ProSiteProfiles Zinc finger RING-type profile. 162 201 IPR001841 -
Pumo2g00412 240 SMART ring_2 162 200 IPR001841 -
Pumo2g00412 240 PANTHER MAHOGUNIN 32 215 IPR045194 GO:0061630
Pumo2g00412 240 CDD mRING-HC-C3HC5_MGRN1-like 160 201 IPR045195 -
Pumo2g00412 240 FunFam probable E3 ubiquitin-protein ligase LOG2 146 211 - -
Pumo2g00412 240 MobiDBLite consensus disorder prediction 219 240 - -
Pumo2g00412 240 SUPERFAMILY RING/U-box 161 208 - -
Pumo2g00412 240 Pfam Zinc finger, C3HC4 type (RING finger) 160 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00412 Pumo-Chr2 7012574 7022155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00412 15 216 C3H Transcription Factor Family AT3G06140 56.650 8.31e-70 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00412 - - gmx:100808808 350.903