Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00409 ATGTCTCACATAGCTGTCGAGAGGAACAGGAGAAGACAGATGAATGAACATCTCAAAGTTTTAAGATCTTTGACCCCATGTTTCTATATCAAAAGGGGTGATCAAGCATCTATAATAGGGGGTGTTATAGAATTCATCAAGGAGTTACACCAAGTTCTTCAAGCTTTGGAGTCCCAGAAAAGAAGAAAGAGTTTGAGCCCTAGCCCTGGTCCGAGTCCACGAACACTGCAGCCAACGTTTCATCAACTTGATAGCTCCTCAATAATTGGGACCAATTCTTTCAAAGAACTTGGAGCAAGCTGCAACTCTTCTGTTGCTGATGTTGAAGTGAAAATCTCGGGTTCAAATGTGATCTTGAAAGTCATTTGCCACAGAATTCCGGGTCAAGTTGCAAAGATCATAACTGTTTTGGAAAGTCTTTCCTTTGAAGTTCTTCATCTGAACATCAGCAGCATGGAGGAGACTGTCCTTTACCAATTTGTGGTCAAGATAGAGCTGGGATGTCAACTAAGTCTGGAGGAACTAGCAATGGAAGTGCAACAAAGCTTCTGCTCTCAGATGCTATAA 567 0.4198 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSPGPSPRTLQPTFHQLDSSSIIGTNSFKELGASCNSSVADVEVKISGSNVILKVICHRIPGQVAKIITVLESLSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAMEVQQSFCSQML 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00409 188 Gene3D - 1 64 IPR036638 GO:0046983
Pumo2g00409 188 FunFam Transcription factor MUTE 1 66 - -
Pumo2g00409 188 SMART finulus 4 55 IPR011598 GO:0046983
Pumo2g00409 188 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Pumo2g00409 188 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 68 IPR036638 GO:0046983
Pumo2g00409 188 PANTHER TRANSCRIPTION FACTOR FAMA 1 183 IPR044283 GO:0003700|GO:0010052
Pumo2g00409 188 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00409 Pumo-Chr2 6960198 6962085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00409 1 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 66.497 1.73e-85 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo2g00409 HLH 4.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00409 - - gmx:100810771 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00409 2 6960198 6962085 Pumo2g00409 2 6960198 6962085 ECH