Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00386 ATGGCTAATTTCACCTTTTCTTCATCTCTGACACACATTCCACCCATTTCAGCTCCATCTTCTTCTGCACCTTTCGACGACTCTTCCGAAGACTCCTGCAGTATATGCTTAGAGCCCTTCACCATTCATGACCCATCCACTGTTACCTGTTGCAAACATGAATATCATCTGCATTGCATTCTTGAATGGTCACAGAGAAGCAAAGAGTGCCCAATATGTTGGCAATCACTTGCTTTGAAAGACCCTGCCAGTCAAGAGCTTCTAGCTGCAGTGGAAGATGAGAAACGTATGAGATCAAGGAACACGACTAATTCTCGTGGCCCCCTTGAACAGCTTAATGATGGCCATGATGATTCCTGCTCAGATGACTCTGATTTTGATGACCAGATTATGAGGCGCCTAGTTGCTGCCGCAAGTAGAGCTCGTTTTGTTCAGAGACAGGAAAGGAAGAGATCACCTGGTGCTGGTCCATCAGAGGTTCTTGGTGTTAACTCCTCGATGCATGTATCTGAGGTGCAAACAACACTTACAACTTCACCATCTGGGGGTAGTTCGCCAGCTTCTGGTGTACCATCTACTGTTAGCATTGAACCTCCAGCATTAAATACTACTCCTGAGAGTGCAAGGAGACTGAACACTTCTGAGATGTTCTCCTTCCCCGAGTCCTTCAAATCCAAATTTTCTGCTGCTTCAGCCAGATATAAGGAATCGTTTTCAAAAGGTACGCGTGGCCTTAAAGAGAAGTTACTTGCTCATAATGTCTCAGTAAAAGAGCTGAGTAAAGGTGTTCAGCGCGAGATGAATGCAGGCATCGCCGGAGTTGCACGAATGATTGAACGCCTTGATCTTAGCTCAAAGCGGTCCAGTTCTCCTCTCATTCCTGTCCATAGCGGGGGAACATCAGACATCCCAGAAGAAGGGAAGTCCATTGAAGAGAATGGCATTGGGCGTTCTCCTAGTAAAGAGAGTGGAGGTGCAGTTCATGATGTTAGTTCAGATGTTCCCCCACTTGTTACTAACATGCAATCCTTTCGAATGAAAGTTCCTCCATTTGTTCAGAGTGGACATGATATGCTATGA 1080 0.4574 MANFTFSSSLTHIPPISAPSSSAPFDDSSEDSCSICLEPFTIHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEDEKRMRSRNTTNSRGPLEQLNDGHDDSCSDDSDFDDQIMRRLVAAASRARFVQRQERKRSPGAGPSEVLGVNSSMHVSEVQTTLTTSPSGGSSPASGVPSTVSIEPPALNTTPESARRLNTSEMFSFPESFKSKFSAASARYKESFSKGTRGLKEKLLAHNVSVKELSKGVQREMNAGIAGVARMIERLDLSSKRSSSPLIPVHSGGTSDIPEEGKSIEENGIGRSPSKESGGAVHDVSSDVPPLVTNMQSFRMKVPPFVQSGHDML 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00386 359 MobiDBLite consensus disorder prediction 163 207 - -
Pumo2g00386 359 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Pumo2g00386 359 MobiDBLite consensus disorder prediction 93 124 - -
Pumo2g00386 359 MobiDBLite consensus disorder prediction 141 207 - -
Pumo2g00386 359 SUPERFAMILY RING/U-box 25 80 - -
Pumo2g00386 359 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 27 82 - -
Pumo2g00386 359 MobiDBLite consensus disorder prediction 288 334 - -
Pumo2g00386 359 FunFam E3 ubiquitin-protein ligase RHF1A 18 85 - -
Pumo2g00386 359 Pfam Ring finger domain 31 73 IPR001841 -
Pumo2g00386 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 105 IPR013083 -
Pumo2g00386 359 SMART ring_2 33 73 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00386 Pumo-Chr2 6733857 6736979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00386 27 81 C3H Transcription Factor Family AT4G00335 45.455 1.13e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00386 K19043 - gmx:100805449 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00386 2 6733857 6736979 Pumo2g00386 2 6733857 6736979 ECH