Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo2g00386 | ATGGCTAATTTCACCTTTTCTTCATCTCTGACACACATTCCACCCATTTCAGCTCCATCTTCTTCTGCACCTTTCGACGACTCTTCCGAAGACTCCTGCAGTATATGCTTAGAGCCCTTCACCATTCATGACCCATCCACTGTTACCTGTTGCAAACATGAATATCATCTGCATTGCATTCTTGAATGGTCACAGAGAAGCAAAGAGTGCCCAATATGTTGGCAATCACTTGCTTTGAAAGACCCTGCCAGTCAAGAGCTTCTAGCTGCAGTGGAAGATGAGAAACGTATGAGATCAAGGAACACGACTAATTCTCGTGGCCCCCTTGAACAGCTTAATGATGGCCATGATGATTCCTGCTCAGATGACTCTGATTTTGATGACCAGATTATGAGGCGCCTAGTTGCTGCCGCAAGTAGAGCTCGTTTTGTTCAGAGACAGGAAAGGAAGAGATCACCTGGTGCTGGTCCATCAGAGGTTCTTGGTGTTAACTCCTCGATGCATGTATCTGAGGTGCAAACAACACTTACAACTTCACCATCTGGGGGTAGTTCGCCAGCTTCTGGTGTACCATCTACTGTTAGCATTGAACCTCCAGCATTAAATACTACTCCTGAGAGTGCAAGGAGACTGAACACTTCTGAGATGTTCTCCTTCCCCGAGTCCTTCAAATCCAAATTTTCTGCTGCTTCAGCCAGATATAAGGAATCGTTTTCAAAAGGTACGCGTGGCCTTAAAGAGAAGTTACTTGCTCATAATGTCTCAGTAAAAGAGCTGAGTAAAGGTGTTCAGCGCGAGATGAATGCAGGCATCGCCGGAGTTGCACGAATGATTGAACGCCTTGATCTTAGCTCAAAGCGGTCCAGTTCTCCTCTCATTCCTGTCCATAGCGGGGGAACATCAGACATCCCAGAAGAAGGGAAGTCCATTGAAGAGAATGGCATTGGGCGTTCTCCTAGTAAAGAGAGTGGAGGTGCAGTTCATGATGTTAGTTCAGATGTTCCCCCACTTGTTACTAACATGCAATCCTTTCGAATGAAAGTTCCTCCATTTGTTCAGAGTGGACATGATATGCTATGA | 1080 | 0.4574 | MANFTFSSSLTHIPPISAPSSSAPFDDSSEDSCSICLEPFTIHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEDEKRMRSRNTTNSRGPLEQLNDGHDDSCSDDSDFDDQIMRRLVAAASRARFVQRQERKRSPGAGPSEVLGVNSSMHVSEVQTTLTTSPSGGSSPASGVPSTVSIEPPALNTTPESARRLNTSEMFSFPESFKSKFSAASARYKESFSKGTRGLKEKLLAHNVSVKELSKGVQREMNAGIAGVARMIERLDLSSKRSSSPLIPVHSGGTSDIPEEGKSIEENGIGRSPSKESGGAVHDVSSDVPPLVTNMQSFRMKVPPFVQSGHDML | 359 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo2g00386 | 359 | MobiDBLite | consensus disorder prediction | 163 | 207 | - | - | |
Pumo2g00386 | 359 | ProSiteProfiles | Zinc finger RING-type profile. | 33 | 73 | IPR001841 | - | |
Pumo2g00386 | 359 | MobiDBLite | consensus disorder prediction | 93 | 124 | - | - | |
Pumo2g00386 | 359 | MobiDBLite | consensus disorder prediction | 141 | 207 | - | - | |
Pumo2g00386 | 359 | SUPERFAMILY | RING/U-box | 25 | 80 | - | - | |
Pumo2g00386 | 359 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 27 | 82 | - | - | |
Pumo2g00386 | 359 | MobiDBLite | consensus disorder prediction | 288 | 334 | - | - | |
Pumo2g00386 | 359 | FunFam | E3 ubiquitin-protein ligase RHF1A | 18 | 85 | - | - | |
Pumo2g00386 | 359 | Pfam | Ring finger domain | 31 | 73 | IPR001841 | - | |
Pumo2g00386 | 359 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 105 | IPR013083 | - | |
Pumo2g00386 | 359 | SMART | ring_2 | 33 | 73 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo2g00386 | Pumo-Chr2 | 6733857 | 6736979 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo2g00386 | 27 | 81 | C3H Transcription Factor Family | AT4G00335 | 45.455 | 1.13e-12 | 64.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo2g00386 | K19043 | - | gmx:100805449 | 548.51 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo2g00386 | 2 | 6733857 | 6736979 | Pumo2g00386 | 2 | 6733857 | 6736979 | ECH |