Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00374 ATGGATTTATTGAGTTTAATAGTCGTGCAGGCAGCTGAGAGAATTCTTCAAACGCATAATGGGGCTATTATGCCAAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCAACTTTTAGCGCTGGTGAAAGGCGCGGCCAAGACGATTCTCCAGATTACACCATATTTGTTGGTGACTTGGCTGCAGATGTTACTGATTACCTCCTTCAAGAGACATTTAGGGCTCGTTATAACTCAGTGAAGGGTGCAAAAGTTGTTATTGATAGGCTAACTGGCCGGACCAAGGGGTATGGCTTTGTAAGGTTTGCTGATGAGAGTGAGCAAGTGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGAGGATTGGACCAGCCAGTAATAAAACCCCTGCTACTCAGCCAAAAGCTTCATATCAGAATTCTCAATCTCAAGGCACACAGAACGAGAATGATCCAAACAATACAACTATTTTTGTTGGCAATTTGGATCCTAATGTCACTGATGATCATCTGAGGCAAGTTTTCAGTCAGTATGGAGAATTAGTTCATGTGAAGATTCCAGCAGGCAAGCGATGTGGGTTTGTCCAATTCTCAGACAGGAGCTGTGCTGAAGAGGCACTTCGGGTGTTAAATGGGACGCTGTTGGGTGGACAAAACGTTCGTCTTTCATGGGGCCGCAGTCCTTCAAACAAACAGGTAATTATATATATTGTTGCATCTCTGCACTTACTTGGCTTCAATATGTTCCTGAATGTTTTTAATAACTTTGAATGCTTTGTTTCTCAGGCTCAGGCAGATCCAAACCAGCAGTGGAATGGTGCTGCTGCTGCTGGTGGATATTATGGGTATGCTCAAGGTTATGAAAACTATGGTTATGCTCCTGCTGGACAGGATCCCAACATGTATGGCAGTTATCCGGGGTATCCGGGTTACCAACCACCTCAGCAACAGCAGCAAATAGGATATAGTTGA 984 0.4461 MDLLSLIVVQAAERILQTHNGAIMPNGGQSFRLNWATFSAGERRGQDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKTPATQPKASYQNSQSQGTQNENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGKRCGFVQFSDRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQVIIYIVASLHLLGFNMFLNVFNNFECFVSQAQADPNQQWNGAAAAGGYYGYAQGYENYGYAPAGQDPNMYGSYPGYPGYQPPQQQQQIGYS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00374 327 CDD RRM2_SECp43_like 51 130 - -
Pumo2g00374 327 SMART rrm1_1 160 227 IPR000504 GO:0003723
Pumo2g00374 327 SMART rrm1_1 53 127 IPR000504 GO:0003723
Pumo2g00374 327 Gene3D - 139 237 IPR012677 -
Pumo2g00374 327 FunFam Polyadenylate-binding protein RBP45C 41 135 - -
Pumo2g00374 327 SUPERFAMILY RNA-binding domain, RBD 46 148 IPR035979 GO:0003676
Pumo2g00374 327 MobiDBLite consensus disorder prediction 308 327 - -
Pumo2g00374 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 131 IPR000504 GO:0003723
Pumo2g00374 327 SUPERFAMILY RNA-binding domain, RBD 146 235 IPR035979 GO:0003676
Pumo2g00374 327 MobiDBLite consensus disorder prediction 126 160 - -
Pumo2g00374 327 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 10 235 - -
Pumo2g00374 327 MobiDBLite consensus disorder prediction 123 160 - -
Pumo2g00374 327 Gene3D - 38 138 IPR012677 -
Pumo2g00374 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 231 IPR000504 GO:0003723
Pumo2g00374 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 224 IPR000504 GO:0003723
Pumo2g00374 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 117 IPR000504 GO:0003723
Pumo2g00374 327 FunFam Polyadenylate-binding protein RBP45C 136 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00374 Pumo-Chr2 6617713 6621968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00374 42 239 Eukaryotic Initiation Factors Gene Family AT2G23350 28.293 3.01e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00374 - - gmx:100794675 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00374 2 6617713 6621968 Pumo2g00374 2 6617713 6621968 ECH
Pumo4g00227 4 3362632 3366999 Pumo2g00374 2 6617713 6621968 PCT