Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00341 ATGAATTACACGGTTGTTCAGGGAAAAGTTGAGGATAAAAACCATGCTGTTGGTGGAGGAAAGGTACCAAGGCAATTCCTTGATATAGGTCCCAGTGGCACTGCCGAAGTAGATGATCAAGTATCTGATTCTTCTTCCGATGAGAGAACACGATCGAGCACACCTCAGAACAATAAAATTGAAGCTGGAACAGGAGATGGTGCGAGAAATAATAATGGTAAAAGCGAGTTGGGTAGGGAAGAGAGTCCAGACTCAGAATCACAAGGTTGGGGTCCCAATAAGCTTCAGAAAGTGAACCATTCCAGTGTCGCCATTGATCCATCCACTACAGAAGCCACAATGAGAAAAGCTCGTGTCTCAGTTCGTGCCCGATCTGAAGCTCCCATGATCAGTGATGGGTGCCAGTGGAGAAAATATGGACAAAAAATGGCTAAGGGGAATCCATGCCCTCGAGCATATTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAGTTCAACGTTGTGCTGAGGATAGAACAATTTTGGTGACAACATATGAAGGCACACATAACCATCCACTGCCACCTGCTGCTATGGCCATGGCATCAACCACTACAGCTGCTGCTACCATGTTGCTGTCTGGATCAATGTCCAGTGCAGATGGAATAATGAACCCAAATTTGCTAGCTAGAGCAATTCTTCCTTGCTCTACAAGCATGGCAACACTTTCAGCTTCAGCACCATTCCCCACTGTGACTTTGGACCTCACACACAACCCAAACCCATTGCAATTTCAAAGACCTGCTGCTCCATTCCAAGTACCCTTCCTCCAAGCGCAGCCTCAGAACTTTGGGTCCGGAGCCACCCCAATTGCACAAGCACAAGCACTTTATAACCAATCAAAATTCTCTGGTCTTCAGTTGTCTCAAGATGTAGGATCTTCCCAATTAGCCCCACAAGCTCCTAGACCACCCTTTCAGCCAAGCCAACAGCCCTCACTGGCTGACACAGTCAGCGCCGCCGCCTCCGCCATCACCGCCGATCCAAACTTCACCGCCGTGCTAGCCGCCGCCATCTCCTCCATCATTGGCGGTGCTCAAAACGCAAACAACAACACCACCACCAACACCAATAACAACAACAGCACAAGCAGGACTACCATTAGCAGCTTTTCAGGAAACTGA 1173 0.4842 MNYTVVQGKVEDKNHAVGGGKVPRQFLDIGPSGTAEVDDQVSDSSSDERTRSSTPQNNKIEAGTGDGARNNNGKSELGREESPDSESQGWGPNKLQKVNHSSVAIDPSTTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILVTTYEGTHNHPLPPAAMAMASTTTAAATMLLSGSMSSADGIMNPNLLARAILPCSTSMATLSASAPFPTVTLDLTHNPNPLQFQRPAAPFQVPFLQAQPQNFGSGATPIAQAQALYNQSKFSGLQLSQDVGSSQLAPQAPRPPFQPSQQPSLADTVSAAASAITADPNFTAVLAAAISSIIGGAQNANNNTTTNTNNNNSTSRTTISSFSGN 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00341 390 MobiDBLite consensus disorder prediction 308 330 - -
Pumo2g00341 390 Pfam WRKY DNA -binding domain 132 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo2g00341 390 Gene3D WRKY domain 115 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo2g00341 390 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 3 371 IPR044810 GO:0003700
Pumo2g00341 390 SUPERFAMILY WRKY DNA-binding domain 123 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo2g00341 390 SMART WRKY_cls 130 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo2g00341 390 MobiDBLite consensus disorder prediction 1 112 - -
Pumo2g00341 390 MobiDBLite consensus disorder prediction 47 71 - -
Pumo2g00341 390 ProSiteProfiles WRKY domain profile. 125 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo2g00341 390 MobiDBLite consensus disorder prediction 86 112 - -
Pumo2g00341 390 FunFam probable WRKY transcription factor 31 115 192 - -
Pumo2g00341 390 MobiDBLite consensus disorder prediction 367 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00341 Pumo-Chr2 5970661 5972138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00341 22 361 WRKY Transcription Factor Family AT1G62300 62.117 8.65e-124 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo2g00341 WRKY 3.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00341 - - gmx:100802124 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00341 2 5970661 5972138 Pumo2g00341 2 5970661 5972138 ECH
Pumo4g03673 4 76277791 76280325 Pumo2g00341 2 5970661 5972138 ECH
Pumo11g01224 11 41671170 41674202 Pumo2g00341 2 5970661 5972138 ECH