Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00330 ATGAAAATTGCATTTCCAAGACAAGAAAAGTCAAATCATCAGACTGGTGATAAGTTGAAGCTCTTAAGGCACTCAAATTCCTTTGGAATTCGAAAGAAACAAAATGATCAATATGCTTATAAGAGTCCAAAATCAAGAGAAAAAGACACTATGTCCTGTGTAAAGAACAGTACTGCACTAGGAATAGAACTTTCTGTTGTACTAGGAGAACGGTCAAACCAATATACTGATAACCTTGCATACAAAATCCCAAGACGCCCAAGAGATTTTGGATCTTCAAAGAAGAGAAAGGTTCAAGATACTCACAAACTTGATATTATAAAATCAAAGTCAATGGGGGAAGAAGATAATATGGTTTGTTCAAAGAGGCCTACTGAACTTCCATTTAGGAAAGGACTAGAGCCAAAGAAGTCTCCTACTGCATTGAAGAAGAAAAGAAAATTCGAAGACAATATCTTAATTAACAATTTGGAAGATGATAAAGTTTATGTTCCCTCAAAGACAAATTCCAGAAGCAAAGGTAGAAAAATGGATGATGTAAAGGATGCTGGGCAAACTTCCAGAAGATGTCATCAGTGCATGAAAAAGGAAAGAGCAGCATATGTACCTTGTACTAAATGTCAGAAAATGTATTGTGTGTGGTGCATCAGGAAATGGTATCCCGATTTGTCAATAGAAGATATTGCACAAGAGTGTCCCTTTTGCCAAAAGAATTGCAATTGCAATGTTTGCTTGTGTTCAAGAGGAATGATTAAGACATCTAACAAGAGCATCAGAGATGATGAAAAGGTTCAGTATCTTCAATACACGATTAACTTGCTCCATCCGTTCATACAACGAATTTGTGAAGAACAAAGGCAAGAGCAAGAGATTGAAGCTAAAATACAAGGTATTAAGCTTCAGCTTTGGGGTTTTTATTTAAATTTGAAGGCATCACTAACAATAATCTCTCTTGCCAGGAAAATCAATGACCATTGTGCTACTTCATTTACTGACCTTTATCGAAGCTGCCCCAAGTGTTCCTTTGAAATCTGCCTTAACTGTTGCAAAGAAATACGCAATGGAAGTATATCACCCCGGTCTGAACTGAAGTTTCAATATGTGAATAGAGGCTATGATTATATGCATGGTGGTGATCCTTTACCAGTGTCTTGTGATTTAAGGACTTCAAAAGGTCATAGTGAGATATTTACCAAATGGAGTGCTAACAGTGATGGAAGTATTAGATGTGCTCCAAAAGAAATGGGTGGCTGTGGTTGCTCTGTGTTGGAGCTGAAGCGCATGTTTCCAAATGGATGGATATCAGACTTGGAAGCCAAAGCTCGTAACATGCTAAAAACTTTTTGCAAAACTGAACAAACAACTCTTCAGAAAGAAGCAGTATCAAGTTGCAATTCTATGATAAGAGCAGCTTTTATAGATGGCACAAATGATAATAACTTATACTGTCCATTGTCAAGTGACCTCATAAATGAAGGGCTATTTCTCTTCCAAAAACATTGGACTAAGGGTGAACCAATCATAGTTCGTGATGTTCTTAACCAGGGGACAGGTCTGAGTTGGGAGCCAATGGTCACATGGCGAGCACTATGTGAAAATGTGGTTCCAGGGATCAACTCAAATATGTCAGAAGTGAAGGCCATTGATTGCTTGGCTAGTTGTGAGGTAGAAATCAACACTCGTACGTTCTTCAAGGGTTACACGCAAGGAAGAACATATAGAAATCTCTGGCCAGAGATGCTGAAGCTAAAAGACTGGCCCCCGTCTGACAAGTTTGAAGATCTTTTGCCTCGCCATTGTGATGAATTTATCCGTTGCTTGCCATTTCAAGAGTATAGTGATCCTCGAGATGGAATTCTCAACCTTGCTGTAAAGTTGCCACCCCATGTCCTAAAGCCAGACTTGGGTCCAAAAACATATATTGCTTATGGGATTAAAGAAGAGCTTGGCAGGGGAGATTCAGTAACAAAACTTCACTGTGATACGTCTGATGCTGTAAATATTTTGACTCACACTGCTGAGGTAACATTAACTGATGAACAGAACTCTGTTATTTCAAAACTGAAAAAAGCTCACATGGCCCAAGATGAGAAAGAGCACCGTGCTCTAGAAAGGGTTGATGAATGCCTGAATGAAGGACCTTGCAAAGATAACAGAGAACAAGAGGATAAAAAAGAAACAACAGAAACAGGTGGTGCTCTTTGGGACATCTTTCGGAGAGAGGATACTGATATGTTAGAAGCATATCTAAGGAAACACTTTAAAGAATTTAGGCATACTTATTGTTCTCCAGTTGAACAGGTTGTCCATCCAATTCATGACCAAAGTTTTTACTTGACTTTGGAACACAAGAAGAAGTTGAAGGAGGAGTTTGGTGTAGAACCTTGGACTTTTGAGCAAAAACTTGGGGAGGCAGTATTTATTCCTGCTGGATGTCCACACCAAGTCAGGAATCTTAAGTCATGCACAAAAGTTGCTGCAGACTTTGTGTCCCCAGAAAATGTTCATATGTGCCTGCATTTAACTGAGGAGTTCCGTCGTCTTCCCAAGAATCACAAGGCTAGAGAAGACAAACTTGAGATAAAGAAGATGATAGTCTATGCTGTTGACCATGCTGTCAAAGAATTAGAAGCTTTAGTTAGGTGTTCTTGA 2652 0.3895 MKIAFPRQEKSNHQTGDKLKLLRHSNSFGIRKKQNDQYAYKSPKSREKDTMSCVKNSTALGIELSVVLGERSNQYTDNLAYKIPRRPRDFGSSKKRKVQDTHKLDIIKSKSMGEEDNMVCSKRPTELPFRKGLEPKKSPTALKKKRKFEDNILINNLEDDKVYVPSKTNSRSKGRKMDDVKDAGQTSRRCHQCMKKERAAYVPCTKCQKMYCVWCIRKWYPDLSIEDIAQECPFCQKNCNCNVCLCSRGMIKTSNKSIRDDEKVQYLQYTINLLHPFIQRICEEQRQEQEIEAKIQGIKLQLWGFYLNLKASLTIISLARKINDHCATSFTDLYRSCPKCSFEICLNCCKEIRNGSISPRSELKFQYVNRGYDYMHGGDPLPVSCDLRTSKGHSEIFTKWSANSDGSIRCAPKEMGGCGCSVLELKRMFPNGWISDLEAKARNMLKTFCKTEQTTLQKEAVSSCNSMIRAAFIDGTNDNNLYCPLSSDLINEGLFLFQKHWTKGEPIIVRDVLNQGTGLSWEPMVTWRALCENVVPGINSNMSEVKAIDCLASCEVEINTRTFFKGYTQGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRCLPFQEYSDPRDGILNLAVKLPPHVLKPDLGPKTYIAYGIKEELGRGDSVTKLHCDTSDAVNILTHTAEVTLTDEQNSVISKLKKAHMAQDEKEHRALERVDECLNEGPCKDNREQEDKKETTETGGALWDIFRREDTDMLEAYLRKHFKEFRHTYCSPVEQVVHPIHDQSFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAADFVSPENVHMCLHLTEEFRRLPKNHKAREDKLEIKKMIVYAVDHAVKELEALVRCS 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00330 883 Pfam JmjC domain, hydroxylase 733 829 IPR003347 -
Pumo2g00330 883 Gene3D Cupin 476 855 - -
Pumo2g00330 883 ProSiteProfiles JmjC domain profile. 615 846 IPR003347 -
Pumo2g00330 883 SMART cupin_9 596 846 IPR003347 -
Pumo2g00330 883 SUPERFAMILY Clavaminate synthase-like 498 881 - -
Pumo2g00330 883 ProSiteProfiles Zinc finger RING-type profile. 190 236 IPR001841 -
Pumo2g00330 883 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 23 879 IPR045109 GO:0032454|GO:0033169
Pumo2g00330 883 FunFam Transcription factor jumonji domain-containing protein 478 855 - -
Pumo2g00330 883 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 187 255 IPR018866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00330 Pumo-Chr2 5894021 5898455 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo2g00330 JmjC 1.7e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00330 K15601 K21989 gmx:100801772 1423.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00330 2 5894021 5898455 Pumo2g00330 2 5894021 5898455 ECH
Pumo4g00168 4 2114901 2118483 Pumo2g00330 2 5894021 5898455 PCT