Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00329 ATGATCACAAATCCAAAAAGAAAATCAAAAACACCATATGTTTTCCTTCTCTTAATTCAGTTATTGATTATTACAAGAGTCAAAGGTAGTTGTGTTAGTGGCTGCAACCTTGCTCTAGCGTCCTATTACATATGGGAAGGAGCAAACCTCACTTACATTAGCAACCTCTTCGGAAAGCCCACATCGGAGATTCTAAAGTACAACCCAAGCGTTAAGAGCCCCGACGTGATTCATTACCAAACGCGGATCAACGTGCCCTTCTCGTGCGACTGCTTGAACGGTGCGTTTTGGGGGCACACTTTCTCGTACGCGATCCAACACGGCGACACCTACAAGATCATTGCCGAGGTTGACTTCTCGAACCTCACCACCGAGGATTGGGTCAGCAGGGTCAACAGCTACCCGACTCACGAGATACCTGACAACGTCAGCATCAATGTCACCGTCAACTGCTCCTGCGGGAACCGACAAGTGTCCAAGGATTATGGCCTCTTCATGACGTACCCGCTTCGCGTCGGTGACAGCTTGCAGCGGGTTGCGGCGGAATCCGGTGTGCCGGCGGAGCTGCTGCTCAGGTACAACCCCACCTCGGATTTCAGCGCTGGGAATGGACTCGTGTTCGTGCCGGCTAAAGGAATATCTAGTGGAGCCATTGCTGGCATAGCTGTTGGAGGAGCTCTTGGGGTCTTAATTTTGGCACTTCTTCTATATGTTGGACTACGCAGAAGAAGGAAAGTGGCTGAGGTATCCCTTCTCCCAGTCCCAGGAGCATCTGAAGATCAGTGTTGTGGAAGCAGTTTGGACAAGGTATCAGAATCTTCTGTTGTTGCTTCTCCAAGGTTGACAGGGATTACAGTGGACAAGTCAGTGGAGTTCTCATATGAGGAGCTAGACAAGGCTACTGAAGGCTTTAGCGTGGCTAATATAATTGGTCGAGGTGGCTTTGGATCTGTTTACTATGCTGAGCTTCGGAATGAGAAAGCTGCAATTAAAAAGATGGATATGCAAGCATCAAATGAATTCCTTGCAGAATTAAAGGTTCTGACACACGTCCATCACTTGAACTTGGTGCGGTTAATAGGATATTGTATTGAGGGCTCCTTATTTTTGGTTTATGAGTATATTGAGAACGGCAATTTAAGTCAACATTTGCGAGGCTCAGGGAAGGATCCGTTAACATGGGCAGCTAGACTTCAAATTGCCCTTGATGCAGCAAGAGGACTAGAATACATACATGAGCACACAGTTCCTGTCTACATCCATAGAGATATTAAATCAGCAAACATTTTGATAGACAAAAACTTTCGTGCAAAGGTTGCAGATTTTGGTCTGACAAAATTGACTGAGTATGGTAGTTCTTCATTACATACACGTCTTGTGGGTACATTTGGTTATATGCCACCAGAATATGCACAATACGGTGATGTTTCCTCCAAAATAGATGTATATGCTTTTGGAGTTGTTCTCTATGAACTCATATCAGGCAAGGAGGCTATCGTCAAGACAAACGAACCTGAGAATGAATCAAAAGGACTAGTCGCCTTGTTTGAAGAAGTTCTTGGTCTGTCAGACCCAAAAGAAGATATTCGTCAACTTGTGTCTCAGCTTGCCAAAGCATGTACACATGAAAACCCTCAACTTAGGCCAAGCATGAGATCAATTGTTGTTGCCTTAATGACACTTTCATCTGCAACTGAGGATTGGGATGTTGGCTCCTTCTATGAAAACCAAGCTTTAGTGCACCTAATGTCTGGAAGGTAG 1761 0.4532 MITNPKRKSKTPYVFLLLIQLLIITRVKGSCVSGCNLALASYYIWEGANLTYISNLFGKPTSEILKYNPSVKSPDVIHYQTRINVPFSCDCLNGAFWGHTFSYAIQHGDTYKIIAEVDFSNLTTEDWVSRVNSYPTHEIPDNVSINVTVNCSCGNRQVSKDYGLFMTYPLRVGDSLQRVAAESGVPAELLLRYNPTSDFSAGNGLVFVPAKGISSGAIAGIAVGGALGVLILALLLYVGLRRRRKVAEVSLLPVPGASEDQCCGSSLDKVSESSVVASPRLTGITVDKSVEFSYEELDKATEGFSVANIIGRGGFGSVYYAELRNEKAAIKKMDMQASNEFLAELKVLTHVHHLNLVRLIGYCIEGSLFLVYEYIENGNLSQHLRGSGKDPLTWAARLQIALDAARGLEYIHEHTVPVYIHRDIKSANILIDKNFRAKVADFGLTKLTEYGSSSLHTRLVGTFGYMPPEYAQYGDVSSKIDVYAFGVVLYELISGKEAIVKTNEPENESKGLVALFEEVLGLSDPKEDIRQLVSQLAKACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVHLMSGR 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00329 586 NCBIfam GlyGly-CTERM protein-sorting domain 224 244 IPR020008 -
Pumo2g00329 586 ProSiteProfiles Protein kinase domain profile. 304 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g00329 586 FunFam PTI1-like tyrosine-protein kinase 3 375 572 - -
Pumo2g00329 586 SUPERFAMILY Protein kinase-like (PK-like) 284 558 IPR011009 -
Pumo2g00329 586 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Pumo2g00329 586 SMART serkin_6 304 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g00329 586 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 16 572 IPR044812 GO:0019199|GO:0045087
Pumo2g00329 586 Gene3D Phosphorylase Kinase; domain 1 285 374 - -
Pumo2g00329 586 ProSiteProfiles LysM domain profile. 40 85 IPR018392 -
Pumo2g00329 586 Gene3D Transferase(Phosphotransferase) domain 1 375 576 - -
Pumo2g00329 586 Pfam Protein tyrosine and serine/threonine kinase 307 557 IPR001245 GO:0004672|GO:0006468
Pumo2g00329 586 FunFam LysM receptor kinase 2 283 374 - -
Pumo2g00329 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00329 Pumo-Chr2 5883195 5891041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00329 8 586 Receptor kinase-like Gene Family AT3G21630 51.373 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Pumo2g00329 PK_Tyr_Ser-Thr 2.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00329 - K13429 gmx:100802308 1007.67