Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00321 ATGAGGGTTCGTTGGGTCTGTCCCGTTGACTGTTGCCGTAAGTTACACGAGACGCCGTTCTCTTCTCTTGTCTTTCTATATAAGCGGGAACGTTGGAGAACGAACGGAGACTTCACGGCGAGTGACACTGTGAATCCTGACCGACTTGGAGAGCACGAAACACACCACTGTAGTATCAACACACTACACTACTATCGCATCGCATTCACGTCAATGGAGCGTTTCGCTAGGTCAGCTAGAGCGTGGCGTTGCCATTGGTGTTCACTTTCCTCTTTCCAAACCCTAGCTTCTCGCTCCTCACCTCGCTCTTCCTTTCCCAAATTTGCGTCTGCTTGGTCTACCTCTTCTTCCTCTGTGTCTGATGTTTCGAGTTCAAGAGTTTTTCGCGAGAATTATTCGTTGCTTCCAGTTGTCTTAGCTGGTATTTTTGGAACTGGATTGGTGGAAGCAGCATTTGCGGATAATGGTGCTGTGGATGTCCAAGAGAGTGCTAAGAAGGAACGTGAGCGAATTGAGGAGTTGCTTAGAAGTAGAGGAATTCGATATGGTTCTTATCCTCGCTTCACTGTTGCCGTTAAAGGCCAAAAGGTCAGTATTAAGTTTCAAATTCCTCCTGGTTGTGAAGTTTCGCAACTTATTGCAAATCTTACTGCACATCTTGGATTGAAAGCTGAAGGCCATGGCGGTGGTTCAGACATGTTATTACGAGCTTGGGACAGCACAGTTGCTTGGCAACTTACCCTTACTCATCCATCCAAACAAAAAACTATTCAGGGGAATGATCTGTCTTCAACAGATATAAATGCAGATGAAAGAGATCTATGTATACTCATATTTCATTCTCTCATAGGCTCAGATAAAGCTGAAATTGAATTCATTAAGCAAGGGAACTTGAGTCCTGAAGAGCTTGATGCTTTCATCTCTGTTTTACAATTAGCTGGTAACAAGTTAGGACAAAGAAGCACCCTGGAAAGAAAACCAAGGGAAGAGACTGAAAAGGTTCCATCTGTAGATAAATCTATTTCTGATCTTGAGGGTATGGGAGTGAGAATTTATGGACTTGATGAACCCGTAGGTATATCAAATGATGGTGAGGTATCATGGGACAACATTGCTGGTTATGAACATCAAAAACGAGTAATAGAAGATACAATACTATTGGCTTTGCATAGTCCTGAAGTATATGATGATATTGCTCGAGGGACTCGTCATAAGTTTGAGTCAAACAGACCTCGAGCTGTGCTATTTGAAGGTCCACCAGGTACAGGGAAAACTTCCTGTGCTCGTGTTATTGCCAATCAAGCGGGTGTCCCTTTGCTATATGTTCCACTCGAGGCAATAATGTCTGAATTCTATGGTAAAAGTGAACGTCTTCTAGGGAAAGTGTTTTCGCTTGCAAACAATCTTCCTAATGGTGCTATTATATTTCTGGATGAGATTGATTCTTTTGCTGCTGCTCGTGACAATGAAATGCATGAAGCTACACGTAGAATATTGTCAGTCTTATTGCGACAGATAGATGGCTTTGAGCAGGATAAGAAAGTAGTTGTCATTGCTGCCACAAATAGAAAGGAAGACCTTGATCCCGCATTAATCAGTCGGTTTGATAGTATGATCGCTTTTGGCTTACCTGATCATCAGAATCGTCAGGAAATAGCATCCAAATATGCAAAGCACCTGTCTAAACCCGAACTAGATGAACTTGCAAGAGTTACAGAAGATATGTCTGGAAGAGATATTAGAGATGTTTGTCAGCAAGCAGAACGATCGTGGGCGTCAAAGATTATTCGTGGGCAAGTTCCTAAAGACGATGAAAAAGCACAGCTTCCACCTTTGCAAGAATATATAGAATGCGCCACGAGTAGACAGGAGGCGCTACGTAGTGTTGCAGCAAACAGGAATTTCGGAAGCTCTTACCGCCGCAGGATTCTAAGCGACTGA 1941 0.4317 MRVRWVCPVDCCRKLHETPFSSLVFLYKRERWRTNGDFTASDTVNPDRLGEHETHHCSINTLHYYRIAFTSMERFARSARAWRCHWCSLSSFQTLASRSSPRSSFPKFASAWSTSSSSVSDVSSSRVFRENYSLLPVVLAGIFGTGLVEAAFADNGAVDVQESAKKERERIEELLRSRGIRYGSYPRFTVAVKGQKVSIKFQIPPGCEVSQLIANLTAHLGLKAEGHGGGSDMLLRAWDSTVAWQLTLTHPSKQKTIQGNDLSSTDINADERDLCILIFHSLIGSDKAEIEFIKQGNLSPEELDAFISVLQLAGNKLGQRSTLERKPREETEKVPSVDKSISDLEGMGVRIYGLDEPVGISNDGEVSWDNIAGYEHQKRVIEDTILLALHSPEVYDDIARGTRHKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLEAIMSEFYGKSERLLGKVFSLANNLPNGAIIFLDEIDSFAAARDNEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDSMIAFGLPDHQNRQEIASKYAKHLSKPELDELARVTEDMSGRDIRDVCQQAERSWASKIIRGQVPKDDEKAQLPPLQEYIECATSRQEALRSVAANRNFGSSYRRRILSD 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00321 646 ProSitePatterns AAA-protein family signature. 515 534 IPR003960 GO:0005524|GO:0016887
Pumo2g00321 646 Pfam ATPase family associated with various cellular activities (AAA) 414 542 IPR003959 GO:0005524|GO:0016887
Pumo2g00321 646 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 345 590 - -
Pumo2g00321 646 SMART AAA_5 410 545 IPR003593 GO:0016887
Pumo2g00321 646 Coils Coil 157 177 - -
Pumo2g00321 646 Gene3D - 544 614 - -
Pumo2g00321 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 594 IPR027417 -
Pumo2g00321 646 CDD RecA-like_protease 399 541 - -
Pumo2g00321 646 Gene3D - 365 543 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00321 Pumo-Chr2 5795526 5802508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00321 410 587 Calmodulin-binding Proteins AT3G56690 38.378 6.74e-28 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00321 - - gmx:100803362 1012.29