Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00314 ATGAGTCAACTCGGCGTGGTCTTGCAGGAATCGTCGCTGCGGACTCAGAGTCAGAGGGAGCCCAGGACCATTCTGGGCCTGTTGAGTGAGCAAATGGACGCCGTTGATGGTGGGGCCCGCAGGAGGCGCAGCTTCAAGGAACGCTTCGGATTCATCGGGATGGGATGCTGTGGGGCCACCTGGGGCTTCCGTTCTGATGCTTTAAGTGTCACCCAAGGAGAACAACAACAACCGCCCCAGCAGGAAACGGATCCGGGTCGACCGTCGGGGCCAGACTGCGTGGGTCCCGCGGGTTCGGGTTCGGGTATGAATCTCGCGGCGGCGTTGGCGGCGGAGAGGCAGCTCCGGGGGCCGCAGGAGGAGGCGGTGAGGGCGCCGGGGACGCCGTGGAGGGTGTCGCTGATGAGGCTGCTGGAGGAGACGGAGGGAGGAGACACCACCACGGCGGAGAAGGAGAAAGAGGAGAATGGAGGTGTTGTGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGACGGAAGAAAGGTGCAGCGTTCATCCCATGTGGGCACACTTTTTGCAGAGTGTGTTCCAGGGAACTGTGGCTTAATCGAGGCTCTTGTCCCCTTTGCAATCGTTCCATCCTCGAGATTCTCGACATTTTCTAG 645 0.6093 MSQLGVVLQESSLRTQSQREPRTILGLLSEQMDAVDGGARRRRSFKERFGFIGMGCCGATWGFRSDALSVTQGEQQQPPQQETDPGRPSGPDCVGPAGSGSGMNLAAALAAERQLRGPQEEAVRAPGTPWRVSLMRLLEETEGGDTTTAEKEKEENGGVVGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00314 214 SUPERFAMILY RING/U-box 160 211 - -
Pumo2g00314 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 214 IPR013083 -
Pumo2g00314 214 SMART ring_2 166 203 IPR001841 -
Pumo2g00314 214 CDD RING-HC 166 203 - -
Pumo2g00314 214 MobiDBLite consensus disorder prediction 70 98 - -
Pumo2g00314 214 ProSiteProfiles Zinc finger RING-type profile. 166 204 IPR001841 -
Pumo2g00314 214 PANTHER OS01G0917900 PROTEIN 13 214 - -
Pumo2g00314 214 Pfam Zinc finger, C3HC4 type (RING finger) 163 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00314 Pumo-Chr2 5694096 5695451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00314 24 214 C3H Transcription Factor Family AT4G22250 55.779 4.75e-62 191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00314 2 5694096 5695451 Pumo2g00314 2 5694096 5695451 ECH