Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00284 ATGTCCGTCACCGGCGATGACGCCAATCTAGCAGTCTCCGACTCCGCCACGATGAATCAGTGGCGCTTTCAGTTCTTCGTCCGCACGGTGCCGACGGGACGCAGCATGGTGATGACCGGTTTCCCGGAAGAGACGGTGAAATCGGTCCTCCACAGGATCGCGTGGGTCACCGGAATACCGTCAAAGGAACAGAGAGTGATATACAACGGGAAACAGCTTCAATTGGAGCAGACTCTCGGAGAGTGCGGCGTCGAAAGCGATTCCAATCTTCACATCGTTGGCCACTTGCGCAGCGGACTCTACCCCGCGGCGTCGCGGATTGTCGACTACATCAACTCCGTGCTCGCGAACGTGTGCCGCGTCAACGGCGCCACGTCATCGCCGCGGCACACGTGCGAGGCTCTGAACACCGTGAAGGTTCTCACCACGCGCTACTTCAACCTCTCCGGCTTCGCGGAGGTTTTCGCGGCCTCGAGAGGCCCCGTGATCCTCGCCTCGCTCTACGCGCCCTCGCGCGGCGCGTGCAGCAGGGAACTCGCCGAGGCTTGCATAAGCAATTTCCTGAGTTGCTCTCGCGCGAAGAATTCGCAGAGTGTTGCCGCTGGCGCGGTGATAGAGTTTTGCAAACAGTTGAGAAAGGTTGGGTGTGGATGTGATGAACCTTTGTATGTTTCGTGTAGAAGCACTTTGGGGTTGTTGTTGGAGACAATTGGGGTTTCGTATGGTTCTGGGAGTGTTAAACGGAAGGTTTCGCTTCGTGATGTTTTCTCCTTTGTTCCTGAGCTTGAGGATAGGTTGTTGGTGGGTTTGGATTGTAGTATAAGCTCTCCTAGTAGCAGCGTGAGGCCTTCGTTGGAAGAGGTTTCAGAATTTGCAATATTTGTAACCACTTTGAGGAGTAGAATTATGCTTCAGCAGCAAGGTTTGGGGGGTTTTGTGAGTGAAGATGGAAAATGTAGTGAGGAGGAGGAGGATCAATTGCTTGCAGAAGAGGTTGATTATCTTCGGGTTATGTTTGTTCGGTTGTTGAGCAAAATGGATGACTGTTTACGCATGATGGAGTTATGCTTGGCCGGCAAGGAACAAGGGGGGAGGGATTTTGTTCTGCACCGCGCTTGGTCTGCGTACCTTTGTGTCTTGAAGGAGTTGTATGAGACTTCTAAGGTCTTTGATGGTGCGGAGGAAATGGTTTGGACAGTTTTGAGGCGTTATAGGAATATGTTGTCTGCGCTGCTTGTTGCTTTTGCGAAGAGAGGTGATGATCATAGGTGGATTCTTGAGAACAGGAGTGTGACCAATTTTGAGTGTAGGAGGCATTTGGCAATGATGCTGTTCCCTGATGTAAAAGAAGACTATGACATGTTTCATGAGATGCTTATTGATAGGTCTCAGTTACTGGCTGAGTCTTTCGAGTACATAGGAAGAGCAAAGCCTGAGTCTCTGCGTTCTGGTCTGTTTATGGAATTCAAAAATGAGGAAGCTACAGGACCGGGTGTGCTAAGGGAGTGGTTTGTTTTGGTGTGTCGTGCAATATTTGATCCACAAAATGCTCTTTTTGTGGCTTGCCCGAATGACTGCAGGAGATTTTATCCGAATCCTGCATCTAAGGTACATCCTCGGCACCTTGAGTACTTTAGGTTCACTGGTCGTGTTATTGCATTGGCTTTGATGAAAAAGGTGCAAGTGGGTATTGTGTTTGATCGTGTGTTTTTCATGCAATTGGCTGGAAATTATGTTACTTTAGAAGATATACGGGATGCAGATCCTTACTTGTATAGAAGCTGCAAGAAAATATTGGAGATGGATGCTGATTTCATTGATTCAGATGCATTGGGACTGACGTTTGTTAGAGAGGTGGAGGAATTAGGATGCAGGAAAGTGGTTGAGCTTTGCCCTGGTGGGAAAAGCATTGTAATGAATAGTAAGAATAGGGAGAAGTATGTTGATCTTCTTATACAGAATTGTTTTGTAACATCCATATCTGAGCAGGTATCACATTTTGCCAAGGGTTTTGGTGATATTCTTTCCAACTCAAAGCTCCAACAGTTCTTCCAATGTTTAGAGCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAAATGCCATTTCTATTGAAGATTGGAAGGCACATACCAAGTACAAGGGTTATAAAGAGTCTGATCGTCAGATATCTTGGTTTTGGGAGTTGAAGGCTTCCGTGGTTTGTCTTCCCCTCTATACATTTGCTGGACTGTGGAACCCAACAATCACCTGCCCTCATCTCACACATGTTTTTACGAGCTGTGTTTCCCCCGGTATTCATCTATGGCTATCATGCAAGATCGCTTTCAAGTCATCACTCAAGAACACATTGGTTGCAGTTTTGGTACTAGTTAAATACACCTACAATTTGGGTAGAGGTGGTTTTGACTGCATACTGGAATATCGGTACTCTAATTTGTACAAATTATAG 2454 0.4719 MSVTGDDANLAVSDSATMNQWRFQFFVRTVPTGRSMVMTGFPEETVKSVLHRIAWVTGIPSKEQRVIYNGKQLQLEQTLGECGVESDSNLHIVGHLRSGLYPAASRIVDYINSVLANVCRVNGATSSPRHTCEALNTVKVLTTRYFNLSGFAEVFAASRGPVILASLYAPSRGACSRELAEACISNFLSCSRAKNSQSVAAGAVIEFCKQLRKVGCGCDEPLYVSCRSTLGLLLETIGVSYGSGSVKRKVSLRDVFSFVPELEDRLLVGLDCSISSPSSSVRPSLEEVSEFAIFVTTLRSRIMLQQQGLGGFVSEDGKCSEEEEDQLLAEEVDYLRVMFVRLLSKMDDCLRMMELCLAGKEQGGRDFVLHRAWSAYLCVLKELYETSKVFDGAEEMVWTVLRRYRNMLSALLVAFAKRGDDHRWILENRSVTNFECRRHLAMMLFPDVKEDYDMFHEMLIDRSQLLAESFEYIGRAKPESLRSGLFMEFKNEEATGPGVLREWFVLVCRAIFDPQNALFVACPNDCRRFYPNPASKVHPRHLEYFRFTGRVIALALMKKVQVGIVFDRVFFMQLAGNYVTLEDIRDADPYLYRSCKKILEMDADFIDSDALGLTFVREVEELGCRKVVELCPGGKSIVMNSKNREKYVDLLIQNCFVTSISEQVSHFAKGFGDILSNSKLQQFFQCLELEDLDWMLHGSENAISIEDWKAHTKYKGYKESDRQISWFWELKASVVCLPLYTFAGLWNPTITCPHLTHVFTSCVSPGIHLWLSCKIAFKSSLKNTLVAVLVLVKYTYNLGRGGFDCILEYRYSNLYKL 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00284 817 Gene3D Hect, E3 ligase catalytic domain 700 736 - -
Pumo2g00284 817 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 577 659 - -
Pumo2g00284 817 ProSiteProfiles Ubiquitin domain profile. 23 99 IPR000626 GO:0005515
Pumo2g00284 817 SUPERFAMILY Hect, E3 ligase catalytic domain 452 730 IPR035983 GO:0004842
Pumo2g00284 817 Gene3D Hect, E3 ligase catalytic domain 577 659 - -
Pumo2g00284 817 SUPERFAMILY Ubiquitin-like 15 100 IPR029071 -
Pumo2g00284 817 SMART ubq_7 23 95 IPR000626 GO:0005515
Pumo2g00284 817 Gene3D Hect, E3 ligase catalytic domains 459 691 - -
Pumo2g00284 817 ProSiteProfiles HECT domain profile. 477 730 IPR000569 GO:0004842
Pumo2g00284 817 SMART hect_3 475 780 IPR000569 GO:0004842
Pumo2g00284 817 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 42 730 - -
Pumo2g00284 817 Pfam HECT-domain (ubiquitin-transferase) 506 730 IPR000569 GO:0004842
Pumo2g00284 817 Pfam Ubiquitin family 26 97 IPR000626 GO:0005515
Pumo2g00284 817 Gene3D - 16 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00284 Pumo-Chr2 5359148 5363522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00284 24 129 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.132 5.50e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00284 - - gmx:100789233 816.224