Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00272 ATGGTGTCGCTGGAGGAATCTCGCTCGAATTCGAGCCGTTTCCCGTTGGCGAGGAATTACCAGTACCACTCCTCCTCGGTTTCGTCGAAAACGCAGCGTCATATCGGAAGGTCCATGCGCACGATACGCTCCAATTTCTTCCAAGACGACAACAGCAGCTGCTCCTTCACCGAGAAATCCACGTGTCTATCGGAGAACCTCACCGACTCCGTCGTCGACCTCCGCCTCGGCGAGCTCGCGTTGCGGAACAGCAAATCGGTGAAATCCTCGCCGGCCGAGGAGGACCTCCTCGATTTGTCGCAGGCATTCAGCGACTTCTCCGCCTGCAGCAGCGACATCTCCGGCGAGCTGCAGCGCCTCGCGACGCTGCCGTCGCCGAAGAAGAGCGGCGTATCCGGCGAGGAGGCGCCGGAGCCTGAGATTGAGCCCTGCATGGGGTTCCTGCAGAGGGAGAACTTCTCCACGGAGATTATCGAGAGCATTTCGCCGGAGGATCTCCAGCCGACAGTGAAGATGTGCATCGACGGCCTCCAGTCACCGTCGGTGGCGGTGAAGCGCTCCGCGGCGGCGAAACTCCGCCTGCTAGCCAAGAACCGCGCCGACAACCGCGTTCTGATCGCGGAGTCCGGTGCTGTCCCGGTCCTTGTTCCGCTTCTCCGGTGCAGCGATCCGTGGACGCAGGAACACGCCGTCACCGCGCTGTTAAACCTCTCTCTCCACGAGGACAATAAAATGCTGATAACCAATGCCGGAGCAGTGAAGTCGCTGATTTATGTGCTGAAGACTGGAACCGAAACTTCGAAGCAGAACGCGGCGTGCGCGCTTTTAAGCCTCGCTTTGGTGGAAGAGAACAAGAGCTCGATCGGGGCTTCCGGTGCGATACCGCCGCTGGTTTCTTTGCTTCTGAATGGTTCGAGCAGAGGGAAGAAGGACGCGCTGACAACGCTTTATAAGCTGTGTTCGGTGAGGCAGAACAAGGAGAGGGCTGTGAGTGCCGGCGCGGTGAAGCCGCTGGTGGAGCTTGTGGCGGAGCAGGGGTCCGGCATGGCGGAGAAGGCCATGGTGGTGCTCAATAGCCTGGCGGGGATTCAGGAAGGGAAGGATGCGATTGTGGAAGAAGGTGGGATTGCTGCTCTTGTGGAGGCTATTGAAGATGGGTCTGTGAAGGGTAAGGAGTTTGCGGTTTTGACACTTCTTCAGCTCTGTGTTGACAGTGTCAGAAACAGAGGGTTTCTTGTTAGAGAGGGTGGGATTCCTCCTCTCGTTGCTCTTTCTCAAACTGGGAGTGTTCGAGCAAAGCACAAGGCTGAAACGCTCCTTCGATATTTGAGGGAATCAAGACAAGAGGCATCAACTTCGAGTTCTTAG 1368 0.576 MVSLEESRSNSSRFPLARNYQYHSSSVSSKTQRHIGRSMRTIRSNFFQDDNSSCSFTEKSTCLSENLTDSVVDLRLGELALRNSKSVKSSPAEEDLLDLSQAFSDFSACSSDISGELQRLATLPSPKKSGVSGEEAPEPEIEPCMGFLQRENFSTEIIESISPEDLQPTVKMCIDGLQSPSVAVKRSAAAKLRLLAKNRADNRVLIAESGAVPVLVPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSSRGKKDALTTLYKLCSVRQNKERAVSAGAVKPLVELVAEQGSGMAEKAMVVLNSLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVDSVRNRGFLVREGGIPPLVALSQTGSVRAKHKAETLLRYLRESRQEASTSSS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00272 455 PANTHER U BOX DOMAIN-CONTAINING 118 444 - -
Pumo2g00272 455 FunFam U-box domain-containing protein 4 309 450 - -
Pumo2g00272 455 SUPERFAMILY ARM repeat 165 444 IPR016024 -
Pumo2g00272 455 Gene3D - 154 454 IPR011989 -
Pumo2g00272 455 SMART arm_5 199 239 IPR000225 GO:0005515
Pumo2g00272 455 SMART arm_5 281 321 IPR000225 GO:0005515
Pumo2g00272 455 SMART arm_5 240 280 IPR000225 GO:0005515
Pumo2g00272 455 SMART arm_5 322 362 IPR000225 GO:0005515
Pumo2g00272 455 SMART arm_5 363 403 IPR000225 GO:0005515
Pumo2g00272 455 SMART arm_5 405 445 IPR000225 GO:0005515
Pumo2g00272 455 Pfam Armadillo/beta-catenin-like repeat 201 238 IPR000225 GO:0005515
Pumo2g00272 455 Pfam Armadillo/beta-catenin-like repeat 283 321 IPR000225 GO:0005515
Pumo2g00272 455 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 292 334 IPR000225 GO:0005515
Pumo2g00272 455 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 333 375 IPR000225 GO:0005515
Pumo2g00272 455 FunFam U-box domain-containing protein 4 156 308 - -
Pumo2g00272 455 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 210 252 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00272 Pumo-Chr2 5222781 5226301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00272 147 448 U-box Gene Family AT2G23140 47.742 9.91e-84 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00272 - - gmx:100818658 805.823