Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00262 ATGGGTCGCTCTCGTGGGAATTTTCACCACGCCGATGAGGACCCCAACCAGAGATCAAGGAGAAAAAAGAATGCTGCCAGTGGAGAAAATTCAGAATCTGGAGCTGCAGGCCAAGGAGCAGGTGAAGGGAAAAAGGCTCTGTACCACTGCAATTATTGTAATAAAGATATAACAGGAAAAATCCGTATTAAGTGTGCCATGTGCCCAGATTTTGACTTGTGTATAGAGTGCTTTTCTGTTGGAGCTGAGGTGACACCTCATAAAAGCAACCACCCTTACAGGGTTATGGATAATTTGTCTTTCCCTCTTATTTGCCCAGACTGGAATGCAGATGACGAAATTTTGCTTCTAGAGGGAATTGAAATGTATGGCTTGGGAAATTGGACAGAAGTTGCTGAGCATGTTGGAACCAAAAACAAAGAGTCATGCATAGAACACTATAGGAATGTATACCTGAACTCCCCGTTCTTTCCTGTTCCGGACATGTCTCATGTTGTCGGGAAAAACAGAAAAGAACTTCTTGCCATGGCGAAAGGGCAGGGTGAAGACAAGAAAGGAATTTCCATGGCGGATCTTAGTATAAAGGCAGAATCTCCCTTTTCTCCATCTAGAGCCAAGGTTGAAGATTCGCATAAAGCTGGCTCTGCTAATCGTTTGCCTTCTAGTTTGAATTCAGAGTCAGATGGCCCCTCAGGTAACACACATGCTGCAACTGGTGCTAACCAAAAGGCATCTAATGTGGGCCGGGGAAAAGGTGGTCCAGGAGTCATTAAAATGGAAGATTCTCAACTAGACAGAGATTTTGGAGGAAAAAAGCCAACTTCCTCTGGAAATGAAGGTCCTTCTTTAGTAGAATCGAGTGGTTATAATGCCAAAAGACAGGAATTTGATCCTGAATATGATAATGACGCTGAACAACTACTCGCTGAAATGGAATTTAAGGACACTGACACTGATGACGAGCGAGAACTGAAACTACGGGTGTTGCGTTTCTATTCAAAAAGGCTTGATGAAAGAAAACGTAGGAAGGATTTCATACTTGAAAGAAATTTGTTATACCCAAATCCATTTGAGAAGGATTTAACACCTGAGGAGAAGACAATATGTCGGAAATATGACTTATTCATGCGCTTTCATACTAAGGAGGAGCATGAGGAATTGCTTAGAACAGTTATCTCTGAACATAGAACTCGTAAAAGACTTCAAGAGCTTAAGGAAGCCCGTGCTGCTGGTTGCCGCAATTCAGCTGAAGCTGATAGATATCTGGCACAAAAGAGAAGAAGGGAAGCTGAAGAAAGTGCTCGAAGGACAAAAGAAAGTGCTCAGGTTGGCCCAAGCAATCAAGGGGTTCCTAATGCATTGATGTCTCCAGACTCTGCTGGCAAGGATTTGAGTGGAAGACCTGCAGGGCCTGCTACTTCTAGTTCTGTCAATGAAATGGATGTGACAGGATACTATGGGGCAGATTTACTTTCTGACCCGGAGAAACGTTTATGCTGTGAGCTAAGGTTGCCTCCAGCCATATATCTAAAGATGCAAGAGCAACTGTCTCTACAAATACTTGCTGGCACTGTCACTGCAAAATCTGATGCTCATCAATTGTTCAAGATGGATGCCATGAAAATTGACAGGGTGTATGATATGCTCATTAAAAAGGGGATTGGTTCCCCCTGA 1674 0.4325 MGRSRGNFHHADEDPNQRSRRKKNAASGENSESGAAGQGAGEGKKALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWTEVAEHVGTKNKESCIEHYRNVYLNSPFFPVPDMSHVVGKNRKELLAMAKGQGEDKKGISMADLSIKAESPFSPSRAKVEDSHKAGSANRLPSSLNSESDGPSGNTHAATGANQKASNVGRGKGGPGVIKMEDSQLDRDFGGKKPTSSGNEGPSLVESSGYNAKRQEFDPEYDNDAEQLLAEMEFKDTDTDDERELKLRVLRFYSKRLDERKRRKDFILERNLLYPNPFEKDLTPEEKTICRKYDLFMRFHTKEEHEELLRTVISEHRTRKRLQELKEARAAGCRNSAEADRYLAQKRRREAEESARRTKESAQVGPSNQGVPNALMSPDSAGKDLSGRPAGPATSSSVNEMDVTGYYGADLLSDPEKRLCCELRLPPAIYLKMQEQLSLQILAGTVTAKSDAHQLFKMDAMKIDRVYDMLIKKGIGSP 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00262 557 Pfam Zinc finger, ZZ type 46 88 IPR000433 GO:0008270
Pumo2g00262 557 CDD SANT 108 150 IPR001005 -
Pumo2g00262 557 MobiDBLite consensus disorder prediction 424 478 - -
Pumo2g00262 557 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Pumo2g00262 557 ProSiteProfiles SWIRM domain profile. 471 557 IPR007526 GO:0005515
Pumo2g00262 557 MobiDBLite consensus disorder prediction 424 438 - -
Pumo2g00262 557 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Pumo2g00262 557 SMART zz_5 44 89 IPR000433 GO:0008270
Pumo2g00262 557 SUPERFAMILY Homeodomain-like 465 554 IPR009057 -
Pumo2g00262 557 SUPERFAMILY RING/U-box 48 110 - -
Pumo2g00262 557 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Pumo2g00262 557 CDD ZZ_ADA2 48 96 IPR041983 -
Pumo2g00262 557 FunFam Transcriptional adapter 2 472 556 - -
Pumo2g00262 557 PIRSF Txn_adaptor_ADA2 35 557 IPR016827 GO:0003713|GO:0006357|GO:0035065
Pumo2g00262 557 Gene3D - 41 96 IPR043145 -
Pumo2g00262 557 Pfam Myb-like DNA-binding domain 107 150 IPR001005 -
Pumo2g00262 557 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Pumo2g00262 557 FunFam Transcriptional adapter 2 101 153 - -
Pumo2g00262 557 FunFam Transcriptional adapter 41 96 - -
Pumo2g00262 557 MobiDBLite consensus disorder prediction 1 42 - -
Pumo2g00262 557 MobiDBLite consensus disorder prediction 199 287 - -
Pumo2g00262 557 SMART sant 104 153 IPR001005 -
Pumo2g00262 557 MobiDBLite consensus disorder prediction 1 27 - -
Pumo2g00262 557 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Pumo2g00262 557 MobiDBLite consensus disorder prediction 215 245 - -
Pumo2g00262 557 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Pumo2g00262 557 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 552 - -
Pumo2g00262 557 MobiDBLite consensus disorder prediction 439 454 - -
Pumo2g00262 557 Gene3D - 102 153 - -
Pumo2g00262 557 Gene3D - 472 555 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00262 Pumo-Chr2 5101118 5107187 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00262 1 555 EF-hand Containing Proteins AT3G07740 47.304 1.77e-164 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo2g00262 Myb_DNA-binding 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00262 K11314 - gmx:100811887 1059.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00262 2 5101118 5107187 Pumo2g00262 2 5101118 5107187 ECH