Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00247 ATGGCTGAGTCTGACAACGAGTCAGGAGGCCACACGGGAAACGCAAGTGGAGGAGGCAATGAATTTTCAGGGTGCAGGGAGCAAGACAGGTTCCTTCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGTTGCCGGCGAACGCGAAGATCTCGAAGGAGGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATAAGCTTCATCACAGGAGAGGCGTCCGAAAAGTGCCAGAAGGAGAAGAGGAAGACGATCAACGGCGATGATCTGCTGTGGGCCATGACCACGCTGGGGTTCGAGGAGTACGTGGAGCCTCTCAAGATTTACCTGCACAAGTATAGGGAGATGGAGGGGGAGAAAACTGCTATGTTGGGAAGGCCACAGGAGAGGGATGAGGGTTATGGTCATGGCCATGGTCATGGTCATGGTCATGGTCATGGTCATACATCTCCTATGATGATGATGATGGGGCATCAGCATCAGCATCAGCAGCAGCATCAGGGCCACGTGTATGGATCTGGGAGTACTACTGGATCAGCATCTTCAGCGAGAACTAGATAG 564 0.5372 MAESDNESGGHTGNASGGGNEFSGCREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASEKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKIYLHKYREMEGEKTAMLGRPQERDEGYGHGHGHGHGHGHGHTSPMMMMMGHQHQHQQQHQGHVYGSGSTTGSASSARTR 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00247 187 MobiDBLite consensus disorder prediction 1 21 - -
Pumo2g00247 187 Gene3D Histone, subunit A 20 171 IPR009072 GO:0046982
Pumo2g00247 187 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Pumo2g00247 187 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Pumo2g00247 187 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Pumo2g00247 187 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 166 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pumo2g00247 187 FunFam Nuclear transcription factor Y subunit B-3 20 143 - -
Pumo2g00247 187 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Pumo2g00247 187 SUPERFAMILY Histone-fold 28 135 IPR009072 GO:0046982
Pumo2g00247 187 MobiDBLite consensus disorder prediction 128 187 - -
Pumo2g00247 187 MobiDBLite consensus disorder prediction 157 187 - -
Pumo2g00247 187 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pumo2g00247 187 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00247 Pumo-Chr2 4978180 4979702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00247 1 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.890 7.27e-73 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo2g00247 CBFD_NFYB_HMF 7.2e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00247 K08065 - gmx:100778034 251.906