Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00245 ATGGACCTCTTCGCCGCCGACCACTTCCCCGTCCCCGACCACGTCGCTCCGTTCCCCGATTCCGGCGACCCCCTCTTCGCCGCCGACCTCCTCTCCCACCGCCACAACCCCCAGAAGCTCCGCCCCATCAGGTCTGCCCTCAATGCCCACCCTCCTCCGCCCCCTCACCCGCAGGATCCGATTCCCTCCGGGTCGGGTCATGCCCCGTGCCACGAATCCAGCTCGTCTTTGGATGCTGACGATGAAGATGAAGATGATGACAATTCATCAGCAAGTACTGAAGGACTTGGCCCCAGAAAGAAGAGGAGAAAGACGGTGAGACAGCTTGAAGATTTTGTGAAGGATTTGGTAACAAAGGTGATGGAAAAGCAGGAGCAGATGCACAAACAGTTAGTGGAAATCATAGAAAACAAGGAGAGGGAAAGGATAAAGAGAGAAGAAGCTTGGAAGAATGAGGAGATGGAGAGAATCAGAAAAGATGAAGAGGCTAGAGCCCAAGAAAAGTCTCGCAATTTGGCCCTCATATCCTTCATTCAGAACCTGTTGGGCCATGAAATTCAAATCCCCCAATCAGTAGTAGTAGAACCATGCAGCAAAAGAGAAGAGGATGAAGTTGAGGTGAGTGCTAGAAAAGATTTGAACAATGATCCAAGTAACAACAGATGGCCTGATGTTGAAGTGCAAGCACTCATCACTGTGAGAACTTCATTGGAGCACAAGTTTCGTCTAATGGGATCAAAAGGGTCAATATGGGAGGAGATATCTGAAGCAATGAATGGCATGGGATACAACCGTTCTGCAAAGAAGTGTAAGGAGAAGTGGGAAAACATCAACAAGTACTATAAAAGGACAATAGGGAGTGGCAAGAAAAGGCGTCAAAATAGTAAAACTTGCCCTTACTTTGATGAGTTGGATATTCTGTATAGAAATGGTCTTCTAAGTATTGGAAATGCCTTGAGCAATACCAGTGATGTTCCCCAGATTGAAGAAAAGGAGTAG 999 0.4785 MDLFAADHFPVPDHVAPFPDSGDPLFAADLLSHRHNPQKLRPIRSALNAHPPPPPHPQDPIPSGSGHAPCHESSSSLDADDEDEDDDNSSASTEGLGPRKKRRKTVRQLEDFVKDLVTKVMEKQEQMHKQLVEIIENKERERIKREEAWKNEEMERIRKDEEARAQEKSRNLALISFIQNLLGHEIQIPQSVVVEPCSKREEDEVEVSARKDLNNDPSNNRWPDVEVQALITVRTSLEHKFRLMGSKGSIWEEISEAMNGMGYNRSAKKCKEKWENINKYYKRTIGSGKKRRQNSKTCPYFDELDILYRNGLLSIGNALSNTSDVPQIEEKE 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00245 332 MobiDBLite consensus disorder prediction 47 62 - -
Pumo2g00245 332 Coils Coil 121 141 - -
Pumo2g00245 332 Coils Coil 151 171 - -
Pumo2g00245 332 Gene3D - 222 283 - -
Pumo2g00245 332 PANTHER FI21293P1 55 316 - -
Pumo2g00245 332 CDD GT1 220 284 - -
Pumo2g00245 332 FunFam Trihelix transcription factor GT-2 222 283 - -
Pumo2g00245 332 ProSiteProfiles Myb-like domain profile. 214 278 IPR001005 -
Pumo2g00245 332 SMART sant 218 280 IPR001005 -
Pumo2g00245 332 MobiDBLite consensus disorder prediction 17 105 - -
Pumo2g00245 332 Pfam Myb/SANT-like DNA-binding domain 220 305 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00245 Pumo-Chr2 4957228 4959209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00245 100 310 Trihelix Transcription Factor Family AT5G47660 45.536 4.40e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo2g00245 Myb_DNA-bind_4 8.7e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00245 - - gmx:100820302 555.444