Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00178 ATGGCAGTTGAAGCTAGTTACATGAATCTCTTGCCTTCTCAGTTACTCACTAACAGAGAAATCATCAAATCCAATCAACAACAACAGCATCAATTAAACTCTGATTACATGTACAATACTCAGATGGATGCAGCTTTGCCTTTACCAGCAACAATGCCTGAATCACTCTTGAATTTCTACCAATCCAACTTTTGTGATCCAAACAAGGCAGATAGTGGTCTCACCTACCATAATCCTCTCCAGAGAAAGCGTTCAAGAGATTTCACCACCGAATTAACCTCTCTCCCAGCTCACCAGAAGAACAAAATCTCCTCTGAACCTTCCTTCCTCAACCAAGAGATTCTCTACCAACTTCAGAATCAACAATCAGAAATTGATCGAGTCCTTGCCCACCATGCTGAGAAAGTGAGAATGGAGTTGGAGGAACAAAAAATGAGGCAATCAAGGATGTTAATGAGCGCAATCCAAGAGGCAATGGCGAAGAAGTTGAAGGAAAAAGACGAAGAGATTCAGAGAATGGGAAAGCTGAATTGGGCCCTTCAAGAAAAGGTCAAAAGTTTGTGCATGGAGAATCAAATTTGGAGGGAATTGGCACAAACGAACGAAACCACAGCCAACTACCTACGAAGCAATTTGGAGCAAGTGCTGGCACATGTCGAAGAGGAACGCGCCGTCGCGATCGCGGTGGCTGATGATGCTCAATCAAGCTGTGGCAGCCATGATGTGGCGGAGGCCGGAGATGATACGGCGGCGTCCGGCGGTGGTAGGTTGTGTAGGAACTGTGGGAATAGGGAGTCAGTGGTTTTGTTGTTACCATGCAGACATCTTTGTCTTTGCACAATGTGTGGGTCCACCGTAAAGAAATGTCCTATTTGTGACTCTGGCATGGATGCTAGCGTGCATGTTAATCTCTCTTAG 918 0.4532 MAVEASYMNLLPSQLLTNREIIKSNQQQQHQLNSDYMYNTQMDAALPLPATMPESLLNFYQSNFCDPNKADSGLTYHNPLQRKRSRDFTTELTSLPAHQKNKISSEPSFLNQEILYQLQNQQSEIDRVLAHHAEKVRMELEEQKMRQSRMLMSAIQEAMAKKLKEKDEEIQRMGKLNWALQEKVKSLCMENQIWRELAQTNETTANYLRSNLEQVLAHVEEERAVAIAVADDAQSSCGSHDVAEAGDDTAASGGGRLCRNCGNRESVVLLLPCRHLCLCTMCGSTVKKCPICDSGMDASVHVNLS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00178 305 CDD mRING-HC-C3HC5_CGRF1-like 256 292 - -
Pumo2g00178 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 304 IPR013083 -
Pumo2g00178 305 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 68 302 IPR017066 -
Pumo2g00178 305 ProSiteProfiles Zinc finger RING-type profile. 258 293 IPR001841 -
Pumo2g00178 305 FunFam BOI-related E3 ubiquitin-protein ligase 1 235 305 - -
Pumo2g00178 305 PIRSF SBP1_RNase_bind 1 305 IPR017066 -
Pumo2g00178 305 Pfam Zinc finger, C3HC4 type (RING finger) 256 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00178 Pumo-Chr2 3827584 3829374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00178 257 292 C3H Transcription Factor Family AT1G73950 58.333 8.68e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00178 K19042 - gmx:100781461 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00178 2 3827584 3829374 Pumo2g00178 2 3827584 3829374 ECH