Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo2g00177 | ATGGGGGATCAGGGTGTTTCAGGTGTTAATGTTGGGAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGTTGTGGAGATGAAGAAGAGGAAGTGTGGAAAGAGAGTGAAGAGACTGAGGAGCCTGTGGAAAGGTTGAAGGATGAGCTTGATGAATTTTCAGTGAAAATGTTCTTCAAGGGGTTGTCAATGGCTGGGGTTGAAAATTCAAGTTCTGGGTTTTCTGGGATTGGAGTGTTCATGGAAAGGTCATCAGGTCTTCCTGCTATAAGGGTGCAGAAAAAGCTTGACTTTTATGCGGAGGAGTCAGTGGTTGACTATTTGGCACTCTTGGATGGGTTGCTGGAAGCTGCACAGAACAAGATCCGCAGGGTTTTTGCTTTCACAGATTCTGAGTTGTTGCATGATCAGATAACATTTGGGAAAAAATTGGAGATGCCTCTTTTGACGGCACTGAGAGAAAGGATTCTGGAACTTGCCAATAATTTTGAAGATTTTGTTTTAAAGCTTATACCCTCTACTGATCTTGAGCAGCCACTGCATTTGGCCAAAGTAGCTATTGGACTTGTCACTTTCCCTGTAAATGGTGAGAAATTGCTTAAGAACTGTTCTATTTGCTGTGATGACAAGCCAGTGCCAATTATGATTACCTTGAAATGTTCGCACACATTCTGTTCTCATTGCTTGAGGGCCTATGCTGATGGCAAAGTACAATCTTGTGAAGTCCCCATAAGATGCCCTCAACCAGGATGCAAGTATTGCATATCTGTAACTGAGTGCAGGTCTTTTCTTCCATTCACCTCCTTTGAATCACTGGAGAAAGCCCTTTCTGAAGCAAATATATACGATTCAGATAGAATTTATTGTCCATTTCCAAATTGCTCTGTTCTCCTTGATCCTCATGAATGTTCATCAGCAAGGGCCAGTTCATCTAGTCAGTCTGACAACTCTTGTATCGAGTGTCCTGTTTGTCGGAGGTTTATCTGTGTGGACTGTAAGGTTCCTTGGCATTCTTCTATGAGTTGTGTAGAATACCAGAATCTGCCAGAGGAGGAGAGGGATGCTTCTGACATTACCTTGCACCGTCTTGCCCAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTAGAATGATTGAGCTTACTCAAGGCTGTTACCACATGACATGCTGGTGTGGTCATGAGTTCTGCTATTCTTGTGGTGCGGAATACCGAGATGTGCAACAGACATGCCAGTGTGCAAATTGGGATGAAGATAACTCTGAAGACTCAGTGGCACACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACATTCAATTCTCTCTCCATGATCGTGGACGCATACTCAGACCAAGAACGATCGCAGCTTGCGCTTATTCAAAGGTTCCTAGCTGGGGGTTTCAGTCTCAGTGACCATAATCCTTACCAATCTCCTCCTCGCTGTACAGACTCCTATGTAGACCCCATGAAGGATCTACATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTGATTAGTGACAACTACTATGAAGATTACATTCAATGA | 1551 | 0.4378 | MGDQGVSGVNVGREEEEDEFCSCCGDEEEEVWKESEETEEPVERLKDELDEFSVKMFFKGLSMAGVENSSSGFSGIGVFMERSSGLPAIRVQKKLDFYAEESVVDYLALLDGLLEAAQNKIRRVFAFTDSELLHDQITFGKKLEMPLLTALRERILELANNFEDFVLKLIPSTDLEQPLHLAKVAIGLVTFPVNGEKLLKNCSICCDDKPVPIMITLKCSHTFCSHCLRAYADGKVQSCEVPIRCPQPGCKYCISVTECRSFLPFTSFESLEKALSEANIYDSDRIYCPFPNCSVLLDPHECSSARASSSSQSDNSCIECPVCRRFICVDCKVPWHSSMSCVEYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTQGCYHMTCWCGHEFCYSCGAEYRDVQQTCQCANWDEDNSEDSVAHSLQESEQWAWETFNSLSMIVDAYSDQERSQLALIQRFLAGGFSLSDHNPYQSPPRCTDSYVDPMKDLHQLPWLERFVSVISDNYYEDYIQ | 516 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo2g00177 | 516 | Gene3D | - | 56 | 188 | IPR036397 | GO:0003676 | |
Pumo2g00177 | 516 | SMART | ibrneu5 | 351 | 410 | IPR002867 | GO:0008270 | |
Pumo2g00177 | 516 | SMART | ibrneu5 | 269 | 341 | IPR002867 | GO:0008270 | |
Pumo2g00177 | 516 | Pfam | Reverse transcriptase-like | 65 | 171 | IPR002156 | GO:0003676|GO:0004523 | |
Pumo2g00177 | 516 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 280 | IPR013083 | - | |
Pumo2g00177 | 516 | Gene3D | - | 339 | 464 | - | - | |
Pumo2g00177 | 516 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 75 | 463 | IPR031127 | GO:0004842|GO:0016567 | |
Pumo2g00177 | 516 | FunFam | RBR-type E3 ubiquitin transferase | 339 | 464 | - | - | |
Pumo2g00177 | 516 | SUPERFAMILY | Ribonuclease H-like | 69 | 172 | IPR012337 | - | |
Pumo2g00177 | 516 | FunFam | RBR-type E3 ubiquitin transferase | 54 | 189 | - | - | |
Pumo2g00177 | 516 | FunFam | RBR-type E3 ubiquitin transferase | 197 | 282 | - | - | |
Pumo2g00177 | 516 | ProSitePatterns | Zinc finger RING-type signature. | 219 | 228 | IPR017907 | - | |
Pumo2g00177 | 516 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Pumo2g00177 | 516 | ProSiteProfiles | Zinc finger RING-type profile. | 202 | 246 | IPR001841 | - | |
Pumo2g00177 | 516 | ProSiteProfiles | TRIAD supradomain profile. | 198 | 416 | IPR044066 | - | |
Pumo2g00177 | 516 | CDD | BRcat_RBR_unk | 282 | 344 | - | - | |
Pumo2g00177 | 516 | Pfam | IBR domain, a half RING-finger domain | 281 | 341 | IPR002867 | GO:0008270 | |
Pumo2g00177 | 516 | Pfam | IBR domain, a half RING-finger domain | 361 | 410 | IPR002867 | GO:0008270 | |
Pumo2g00177 | 516 | CDD | Rcat_RBR_unk | 367 | 403 | - | - | |
Pumo2g00177 | 516 | SUPERFAMILY | RING/U-box | 200 | 278 | - | - | |
Pumo2g00177 | 516 | SUPERFAMILY | RING/U-box | 354 | 418 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo2g00177 | Pumo-Chr2 | 3804365 | 3810038 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo2g00177 | 29 | 401 | C3H Transcription Factor Family | AT2G19610 | 24.745 | 4.37e-28 | 114 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo2g00177 | - | - | gmx:100783040 | 990.334 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo2g00177 | 2 | 3804365 | 3810038 | Pumo2g00177 | 2 | 3804365 | 3810038 | ECH |