Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00177 ATGGGGGATCAGGGTGTTTCAGGTGTTAATGTTGGGAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGTTGTGGAGATGAAGAAGAGGAAGTGTGGAAAGAGAGTGAAGAGACTGAGGAGCCTGTGGAAAGGTTGAAGGATGAGCTTGATGAATTTTCAGTGAAAATGTTCTTCAAGGGGTTGTCAATGGCTGGGGTTGAAAATTCAAGTTCTGGGTTTTCTGGGATTGGAGTGTTCATGGAAAGGTCATCAGGTCTTCCTGCTATAAGGGTGCAGAAAAAGCTTGACTTTTATGCGGAGGAGTCAGTGGTTGACTATTTGGCACTCTTGGATGGGTTGCTGGAAGCTGCACAGAACAAGATCCGCAGGGTTTTTGCTTTCACAGATTCTGAGTTGTTGCATGATCAGATAACATTTGGGAAAAAATTGGAGATGCCTCTTTTGACGGCACTGAGAGAAAGGATTCTGGAACTTGCCAATAATTTTGAAGATTTTGTTTTAAAGCTTATACCCTCTACTGATCTTGAGCAGCCACTGCATTTGGCCAAAGTAGCTATTGGACTTGTCACTTTCCCTGTAAATGGTGAGAAATTGCTTAAGAACTGTTCTATTTGCTGTGATGACAAGCCAGTGCCAATTATGATTACCTTGAAATGTTCGCACACATTCTGTTCTCATTGCTTGAGGGCCTATGCTGATGGCAAAGTACAATCTTGTGAAGTCCCCATAAGATGCCCTCAACCAGGATGCAAGTATTGCATATCTGTAACTGAGTGCAGGTCTTTTCTTCCATTCACCTCCTTTGAATCACTGGAGAAAGCCCTTTCTGAAGCAAATATATACGATTCAGATAGAATTTATTGTCCATTTCCAAATTGCTCTGTTCTCCTTGATCCTCATGAATGTTCATCAGCAAGGGCCAGTTCATCTAGTCAGTCTGACAACTCTTGTATCGAGTGTCCTGTTTGTCGGAGGTTTATCTGTGTGGACTGTAAGGTTCCTTGGCATTCTTCTATGAGTTGTGTAGAATACCAGAATCTGCCAGAGGAGGAGAGGGATGCTTCTGACATTACCTTGCACCGTCTTGCCCAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTAGAATGATTGAGCTTACTCAAGGCTGTTACCACATGACATGCTGGTGTGGTCATGAGTTCTGCTATTCTTGTGGTGCGGAATACCGAGATGTGCAACAGACATGCCAGTGTGCAAATTGGGATGAAGATAACTCTGAAGACTCAGTGGCACACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACATTCAATTCTCTCTCCATGATCGTGGACGCATACTCAGACCAAGAACGATCGCAGCTTGCGCTTATTCAAAGGTTCCTAGCTGGGGGTTTCAGTCTCAGTGACCATAATCCTTACCAATCTCCTCCTCGCTGTACAGACTCCTATGTAGACCCCATGAAGGATCTACATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTGATTAGTGACAACTACTATGAAGATTACATTCAATGA 1551 0.4378 MGDQGVSGVNVGREEEEDEFCSCCGDEEEEVWKESEETEEPVERLKDELDEFSVKMFFKGLSMAGVENSSSGFSGIGVFMERSSGLPAIRVQKKLDFYAEESVVDYLALLDGLLEAAQNKIRRVFAFTDSELLHDQITFGKKLEMPLLTALRERILELANNFEDFVLKLIPSTDLEQPLHLAKVAIGLVTFPVNGEKLLKNCSICCDDKPVPIMITLKCSHTFCSHCLRAYADGKVQSCEVPIRCPQPGCKYCISVTECRSFLPFTSFESLEKALSEANIYDSDRIYCPFPNCSVLLDPHECSSARASSSSQSDNSCIECPVCRRFICVDCKVPWHSSMSCVEYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTQGCYHMTCWCGHEFCYSCGAEYRDVQQTCQCANWDEDNSEDSVAHSLQESEQWAWETFNSLSMIVDAYSDQERSQLALIQRFLAGGFSLSDHNPYQSPPRCTDSYVDPMKDLHQLPWLERFVSVISDNYYEDYIQ 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00177 516 Gene3D - 56 188 IPR036397 GO:0003676
Pumo2g00177 516 SMART ibrneu5 351 410 IPR002867 GO:0008270
Pumo2g00177 516 SMART ibrneu5 269 341 IPR002867 GO:0008270
Pumo2g00177 516 Pfam Reverse transcriptase-like 65 171 IPR002156 GO:0003676|GO:0004523
Pumo2g00177 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 280 IPR013083 -
Pumo2g00177 516 Gene3D - 339 464 - -
Pumo2g00177 516 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 75 463 IPR031127 GO:0004842|GO:0016567
Pumo2g00177 516 FunFam RBR-type E3 ubiquitin transferase 339 464 - -
Pumo2g00177 516 SUPERFAMILY Ribonuclease H-like 69 172 IPR012337 -
Pumo2g00177 516 FunFam RBR-type E3 ubiquitin transferase 54 189 - -
Pumo2g00177 516 FunFam RBR-type E3 ubiquitin transferase 197 282 - -
Pumo2g00177 516 ProSitePatterns Zinc finger RING-type signature. 219 228 IPR017907 -
Pumo2g00177 516 MobiDBLite consensus disorder prediction 1 24 - -
Pumo2g00177 516 ProSiteProfiles Zinc finger RING-type profile. 202 246 IPR001841 -
Pumo2g00177 516 ProSiteProfiles TRIAD supradomain profile. 198 416 IPR044066 -
Pumo2g00177 516 CDD BRcat_RBR_unk 282 344 - -
Pumo2g00177 516 Pfam IBR domain, a half RING-finger domain 281 341 IPR002867 GO:0008270
Pumo2g00177 516 Pfam IBR domain, a half RING-finger domain 361 410 IPR002867 GO:0008270
Pumo2g00177 516 CDD Rcat_RBR_unk 367 403 - -
Pumo2g00177 516 SUPERFAMILY RING/U-box 200 278 - -
Pumo2g00177 516 SUPERFAMILY RING/U-box 354 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00177 Pumo-Chr2 3804365 3810038 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00177 29 401 C3H Transcription Factor Family AT2G19610 24.745 4.37e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00177 - - gmx:100783040 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00177 2 3804365 3810038 Pumo2g00177 2 3804365 3810038 ECH