Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00174 ATGGCTGATAATATCACAGTTGATGCAAATGTGACGAGTTTTAGTTGGGCAGTGGACAGTGCGATAAGGAGTGTGACTGCGTCAAATTTGGGAGAATCCCGTCTCCATAGTTTTGCTTCGGTAGTGAACAGTCCGATAAGGAGTTGGACTGCGTCAATTTTGAGAACATCTTGTGTCCAGAGTTTTGCTTCGGTAGTGAACAGTGCCATAAAGAGTTGGACTGCGTCAAATTCAAATTCGGGAACATCCCATTCCCCTGTGACAGTGGACAAGGGGTTGAGTAGTATTGGAGCAGATTTGGGAACATCTCCTACGCATGGTTTTGCTTCGGCAGTGGACAATGCAATAGGAAGTAGTAGTAGTAGTGGAGCAGATTTGGGAACGGGAATGGACAATAATGTGATGTCAAATGCGACGGGAGTTGTTGAAGGTTATCCATCATTCACCCTGGCTGAGCTTGTAGAAGCCACCGACAATTTCTCATTTGACAACATGGTTGGTGCTGGAAGCTTCGGTGTTGTGTACAGAGGCAAACTCGTTGATGGTCGTGAGGTGGCTATCAAGAGGGGTGAAAACTGGACAAAGGAAAACAATGGATGTAACCATAGTTTGGCCTTGGCCTTCTTGTGCAGTTTACACCACAAGAACTTGGTTGGGCTGGTTGGGTTATGTGAAGAGGAAGATGAAAGGCTCTTGGTGTATGAGTACATGAAGAACGGATCGTTGTATGATCATTTGCATTACAAGCGTAGCAGTGTGCTGAATTCGTGGAAAATGAGGATCAATATTGCTTTGAATGCTTCCCGAGGAATACAATATCTTCATCACCATCCAGATCGATACACTTGTCACGGAGATATCAAGTCTTCCAACATTCTTTTTGATGCCACTTGGACGGCAAGAGTATCTGATATTGAATTGTCCTTCTGGATTCCAAAACCTTACGGTAAACACGATGAGAGGGTAACGGGAAGCCCTGGATACGAAGATCCTTATACTAAGTCATATGGTCCAAAGTTGAAATCAGAGAGTGATGTGTATGCGTTTGGAGTTGTACTGTTTGAACTTTTAACGGGAAAGACAGCTTTACACATCCAGCATAACTTGGTTCGCTTTCTAACGCTTGATAATTTGGCTAGAAATTTGGCCGAAATTTTGGATCCAAGGGTTGGACCACCCAATGTGAATGAAGCAGAGGCACTGGAGTTAGTGGCCAAAACCGCCATCCGTTGTGTGGAATACTTGGGAAATTATAGACCAAAAATGGCTGACATTGTAGTCAATTTGGAGCGGGCTCTGCCTATTTGTGATAGAGTACTGATACTCAGACGTCGAGACATTAACTACCCCGTTAGACACCCGTCTATGTGA 1371 0.4435 MADNITVDANVTSFSWAVDSAIRSVTASNLGESRLHSFASVVNSPIRSWTASILRTSCVQSFASVVNSAIKSWTASNSNSGTSHSPVTVDKGLSSIGADLGTSPTHGFASAVDNAIGSSSSSGADLGTGMDNNVMSNATGVVEGYPSFTLAELVEATDNFSFDNMVGAGSFGVVYRGKLVDGREVAIKRGENWTKENNGCNHSLALAFLCSLHHKNLVGLVGLCEEEDERLLVYEYMKNGSLYDHLHYKRSSVLNSWKMRINIALNASRGIQYLHHHPDRYTCHGDIKSSNILFDATWTARVSDIELSFWIPKPYGKHDERVTGSPGYEDPYTKSYGPKLKSESDVYAFGVVLFELLTGKTALHIQHNLVRFLTLDNLARNLAEILDPRVGPPNVNEAEALELVAKTAIRCVEYLGNYRPKMADIVVNLERALPICDRVLILRRRDINYPVRHPSM 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00174 456 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 57 438 IPR044815 GO:0004674
Pumo2g00174 456 Pfam Protein kinase domain 162 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g00174 456 SUPERFAMILY Protein kinase-like (PK-like) 142 429 IPR011009 -
Pumo2g00174 456 Gene3D Phosphorylase Kinase; domain 1 122 236 - -
Pumo2g00174 456 ProSitePatterns Protein kinases ATP-binding region signature. 166 188 IPR017441 GO:0005524
Pumo2g00174 456 Gene3D Transferase(Phosphotransferase) domain 1 237 437 - -
Pumo2g00174 456 SMART serkin_6 160 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g00174 456 ProSiteProfiles Protein kinase domain profile. 160 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00174 Pumo-Chr2 3749817 3751187 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00174 148 436 Receptor kinase-like Gene Family AT3G55950 51.899 1.17e-81 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Pumo2g00174 Pkinase 1.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00174 - - vun:114193227 348.206