Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00173 ATGCATTATAGTGTTGGTGTCAAACCTAAGGTTTCTTCAAAATTTGGCCAGCCTCAGAAATTATCAAAGTCTGATCTGACCATGATCAGAGAGAAACTGTTTTCTGCTGATCCTGAGAGGTTGCCCTTGGAGATGACTGCACATGACGGTGCAAAAAATATTTATAGTGCAGTACAATTACCAGAAGAGACCTTTACTGTGGAGATCTCTGAAGGGGAGGATGAAAAGACCATTTCATATAGTGTTACCTTAACTCTTGTTAATAAACTTAGGCTTCACAAGTTAATGGACTATCTTAGTGGGCATAACCTCTCCATTCCTAGGGATATTTTACAAGGGATGGATGTGGTGGTGAAAGAGAATCCTGCTAGACGTACTATTTCTGTAGGACGACACTTCTATCCCACAAATCCTCCTGTCGTAATGAAGGATCTTCACCACGGGATAGTTGCTATTGGGGGGTTTCAGCATAGTTTAAAGCCTACATCTCAGGGTCTGTCCTTATGTGTAGACTACTCAGTATTGGCTTTTCGAAAGCGAATGTCAGTCTTGGATTTCTTGCATGAGCGTATTGATAACTTTAAATTGGATGAATTTGAAAAATTCAGGAAATTCGTTGAGGAGGCACTTATTGGATTGAAAGTTAATGTGACTCATCGTAAATGCAATCGGAAATACATTATTTCAAGATTAACACCTATGATTACGAGGTATGTCACTTTTCCCATTGACGATACTGGTGGATGGAGTCACTCAAAGGATGTTAGTCTTCTTACCTTTTTTAAAGACAAATATGGCAAGGATATTGTGTACAAAGATATTCCTTGTCTAGATTTAGGGAAAGACAAGAAGAAGAACTATGTACCCATGGAATTCTGTGTTTTGGTTGAGGGCCAAAGATATCCCAAAGAGCGTCTGGATGGTATTTCTGCAAATACATTGAAAGCAATGTCACTAGCTCGTCCAAATGAGAGGGAGTGTGCAATACAAAAGATGGTGCAGTCTAGTGATGGACCTTGCGGTGGTGATCTTATTCAAAATTTTGGAATGAGTGTCAACACAACCATGACAACTATTGTAGGACGAGTACTTGGTCCTCCAGAGTTGAAGTTAGGTGATGCAAATGGAAAGATCATCAAATTAACAGTGGATCTGGAGAAATGTCACTGGAATCTTGCTGGAAGATCAATGGTGGAAGGTAAACCAGTTGAGTATTGGGGCATTCTTGATTTCACTAGTTTTGATCCATATAAGTACAAATTAAGAGGCAAGGAATTCATTCAAAAGCTTATAGGTAAATACCAGAAATTGGGTATATACATGCAGGAGCCCATTTGGTATGAAGAATCTTCAATGAAGATACTTGCAAGTTATGATTTACTATCCGAATTACTTGAAAAAATTAACAATATTTGTAAATATAACCAAGCTCACCTGCAATTTCTTCTCTGTGTAATGGCTAAAAAAAGTCCTGGTTATAAGTACCTGAAGTGGATTTCTGAGACCAAACTCGGGATAGTGACACAATGCTGCTTGTCTAATAGTGCTAATGAAGGGGAGGACAAATTTTTTACTAATCTGGCTCTCAAGATCAATGCCAAGCTTGGAGGCAGTAACGTGGAGCTCAGTAATGGGCTACCTTACTTTGAGGGTGAAGGACATGTTATGTTTTTAGGGGCTGATGTCAACCATCCTGGTTATCAAGACACCAGGAGTCCATCAATTGCTGCTGTGGTTGCTACTGTTAATTGGCCTGCTGCAAATCGTTATGCAGCACGGGTTTTCCCACAATACAATCGAAGTGAGAAAATATTGAACTTTGGGGATGTTTGTCTTGAGCTTGTTGCATGCTATAGGAGGATGAATGGAGTTAGGCCAGAAAGAATTGTCATTTTTCGTGATGGGGTGAGTGAAAACCAGTTTGACATGGTTCTTAATGAAGAGCTACTAGATTTGAAGAGAGTATTTCAAAGAGTAAATTACTTTCCAACAGTCACTCTTATTGTAGCACAAAAACGACATCAAACTCGATTTTTTCCTGAGGGTTGGAGGGATGGGTCTTCCAGTGGCAATATTTTGCCAGGAACAGTTGTGGACACGAAAGTTATACACCCTTTTGAGTTTGACTTCTACCTTTGTAGTTACTATGGAAACCTAGGTACAAGCAAGCCTACTCATTACCATGTCTTATGGGACGAGCACAAGTTTACATCTGATGAATTGCAGAAACTCATATACGAAATGTGCTTCATCTTTGCAAAGTGCACTAAACCTGTATCTTTAGTCCCTCCTGTGTATTATGCTGACCTTGCTGCTTATAGAGGACGATTATACCATGAAGCAAGGATTGGGATGCTATCTCCAAAGTCAACAGCATCTTCATCTTCTAAAGATGCTTCATCAGTTTCACGAACTGCTTCATTTGAACAGGGATTTTACACATTGCATGCTGACCTGGAAAATATAATGTTCTTCATCTAA 2481 0.3946 MHYSVGVKPKVSSKFGQPQKLSKSDLTMIREKLFSADPERLPLEMTAHDGAKNIYSAVQLPEETFTVEISEGEDEKTISYSVTLTLVNKLRLHKLMDYLSGHNLSIPRDILQGMDVVVKENPARRTISVGRHFYPTNPPVVMKDLHHGIVAIGGFQHSLKPTSQGLSLCVDYSVLAFRKRMSVLDFLHERIDNFKLDEFEKFRKFVEEALIGLKVNVTHRKCNRKYIISRLTPMITRYVTFPIDDTGGWSHSKDVSLLTFFKDKYGKDIVYKDIPCLDLGKDKKKNYVPMEFCVLVEGQRYPKERLDGISANTLKAMSLARPNERECAIQKMVQSSDGPCGGDLIQNFGMSVNTTMTTIVGRVLGPPELKLGDANGKIIKLTVDLEKCHWNLAGRSMVEGKPVEYWGILDFTSFDPYKYKLRGKEFIQKLIGKYQKLGIYMQEPIWYEESSMKILASYDLLSELLEKINNICKYNQAHLQFLLCVMAKKSPGYKYLKWISETKLGIVTQCCLSNSANEGEDKFFTNLALKINAKLGGSNVELSNGLPYFEGEGHVMFLGADVNHPGYQDTRSPSIAAVVATVNWPAANRYAARVFPQYNRSEKILNFGDVCLELVACYRRMNGVRPERIVIFRDGVSENQFDMVLNEELLDLKRVFQRVNYFPTVTLIVAQKRHQTRFFPEGWRDGSSSGNILPGTVVDTKVIHPFEFDFYLCSYYGNLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFIFAKCTKPVSLVPPVYYADLAAYRGRLYHEARIGMLSPKSTASSSSKDASSVSRTASFEQGFYTLHADLENIMFFI 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00173 826 SMART DUF1785_2 127 180 IPR014811 -
Pumo2g00173 826 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 781 - -
Pumo2g00173 826 Pfam Argonaute linker 2 domain 324 370 IPR032472 -
Pumo2g00173 826 SMART Piwi_a_2 481 779 IPR003165 GO:0003676
Pumo2g00173 826 ProSiteProfiles Piwi domain profile. 481 780 IPR003165 GO:0003676
Pumo2g00173 826 SUPERFAMILY PAZ domain 176 335 IPR036085 GO:0005515
Pumo2g00173 826 SUPERFAMILY Ribonuclease H-like 473 780 IPR012337 -
Pumo2g00173 826 CDD PAZ_argonaute_like 181 296 - -
Pumo2g00173 826 Gene3D - 363 544 - -
Pumo2g00173 826 Pfam Piwi domain 482 776 IPR003165 GO:0003676
Pumo2g00173 826 Pfam N-terminal domain of argonaute 2 118 IPR032474 -
Pumo2g00173 826 ProSiteProfiles PAZ domain profile. 181 297 IPR003100 GO:0005515
Pumo2g00173 826 Pfam Argonaute linker 1 domain 128 179 IPR014811 -
Pumo2g00173 826 Gene3D paz domain 175 301 - -
Pumo2g00173 826 SMART PAZ_2_a_3 181 314 IPR003100 GO:0005515
Pumo2g00173 826 Gene3D - 551 826 IPR036397 GO:0003676
Pumo2g00173 826 Pfam PAZ domain 191 311 IPR003100 GO:0005515
Pumo2g00173 826 FunFam Protein argonaute 7 175 301 - -
Pumo2g00173 826 CDD Piwi_ago-like 345 778 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00173 Pumo-Chr2 3745253 3749352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00173 2 804 Eukaryotic Initiation Factors Gene Family AT1G48410 36.278 1.86e-147 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00173 K11593 - gmx:100783571 1563.51