Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00161 ATGAAGGAAGGTGGTGGTAGAAAGCAGGGTGCAGCCTCACCCTGTGCTGCATGCAAGCTTCTGAGGAGAAGGTGTGCTCAGGATTGTGTTTTTGCTCCATATTTCCCAGCAGATGAACCCCAAAAGTTTGCAAATGTGCACAAGGTCTTTGGTGCTAGCAATGTCAACAAGATGCTCCAGGACCTACCAATGCATCAACGAGGGGATGCAGTGAGCAGCATGGTGTATGAGGCCAATGCCAGAGTCCGAGACCCTGTTTATGGGTGCGTTGGGGCCATCTCTTCGCTTCAGCAACAGATTGATGTGCTACAGACTCAATTGGCCCTGGCCCAGGCTGAGGTGGCCCACCTTCGGGTGAGACAAAACCGATGCTTTTCCAATCATGGGCTTAGGCCCACTAGCCCAACCGATAGTGGGTTTCCATCATCCAATACCTTGGACTCACATGTCAAGCCTATTTTCGACATAGACATGGTGGACCAGGCCAGCTATGGTGGTTCAATGTGGTCATGA 513 0.5146 MKEGGGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVAHLRVRQNRCFSNHGLRPTSPTDSGFPSSNTLDSHVKPIFDIDMVDQASYGGSMWS 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00161 170 Coils Coil 93 120 - -
Pumo2g00161 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 123 - -
Pumo2g00161 170 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Pumo2g00161 170 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00161 Pumo-Chr2 3566038 3570857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00161 1 170 AS2 family AT1G31320 71.585 2.02e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo2g00161 LOB 1.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00161 - - gmx:100794219 341.658