Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00156 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACGCGGCTCCCTCCGCCGCCGCCGCTGCCGGCCCGCTCGTCCAGCACGACGCCTCCGCGGCCGCCTCCGCCGTGTCCAACGGAGGCCCCGCCGCGCCCACCCCCTCCGCGGCGGACCCTGCGGGCGGCAACGTGCCCGGGCGGCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTGCGCAGCCTGTGCATGAAGGGCGACGCGTGCGGGTTCCTGCACCAGTACGACAAGGCGCGGATGCCGGTGTGCCGGTTCTTCAGACTCTACGGAGAGTGCAGAGAACAGGATTGCGTGTATAAACACACCAATGAAGACATCAAGGAGTGTAACATGTACAAGTTGGGGTTTTGTCCTAATGGGCCTGATTGTCGATATAGGCATGCAAAATCTCCTGCACCTCCACCTCCTGTTGAAGAGGTCCTTCAAAAGATCCAACATTTATATTCCTACAATTATAATTCATCCAACAAATTTTTCCAACAAAGGGGTGCTAATTATAATCAACAAGCTGAAAAATCCCAGCTTCCTCAAGGAACTAATTCTACAAACCAAGCAGTGACCGGAAAACCATTACCAGCAGAGTCGGGAAATGTCCAGCCACAGCAACAAGTTCAACAGTCTCAGCAGCAGGTCAACCAGAGCCAAATGCAAAATCCTGCTAATGGCCAGCCTAATCAAGCCAATAGAACTGCAACCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTTTGGGCAACTCAAAGGAGCAATGAATCCAAACTAAATGAAGCATTTGACTCTGTGGAAAATGTGATATTAATTTTCTCAGTCAACCGTACTAGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGGAACTGGAAATATGCTCATGGAACTGCACATTATGGGCGAAATTTCTCTGTTAAATGGTTGAAGTTATGTGAACTGTCATTCCACAAAACTCGCCATTTAAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAGCCCTCTATTGGAGAGCAGTTGGCATCCTTGCTTTATCTTGAGCCAGATAGTGAACTTATGGCTATCTCAGGTTGCAGCAGAGTCTAA 1227 0.498 MEDSEGVLSFDFEGGLDAAPSAAAAAGPLVQHDASAAASAVSNGGPAAPTPSAADPAGGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPAPPPPVEEVLQKIQHLYSYNYNSSNKFFQQRGANYNQQAEKSQLPQGTNSTNQAVTGKPLPAESGNVQPQQQVQQSQQQVNQSQMQNPANGQPNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISGCSRV 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00156 408 Gene3D ph1033 like domains 234 394 - -
Pumo2g00156 408 ProSiteProfiles YTH domain profile. 256 391 IPR007275 GO:0003723
Pumo2g00156 408 ProSiteProfiles Zinc finger C3H1-type profile. 66 93 IPR000571 GO:0046872
Pumo2g00156 408 Pfam YT521-B-like domain 256 390 IPR007275 GO:0003723
Pumo2g00156 408 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 35 397 IPR045168 -
Pumo2g00156 408 SUPERFAMILY CCCH zinc finger 66 97 IPR036855 GO:0046872
Pumo2g00156 408 ProSiteProfiles Zinc finger C3H1-type profile. 120 147 IPR000571 GO:0046872
Pumo2g00156 408 SMART c3hfinal6 66 92 IPR000571 GO:0046872
Pumo2g00156 408 SMART c3hfinal6 94 120 IPR000571 GO:0046872
Pumo2g00156 408 SMART c3hfinal6 122 146 IPR000571 GO:0046872
Pumo2g00156 408 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 61 122 - -
Pumo2g00156 408 MobiDBLite consensus disorder prediction 40 62 - -
Pumo2g00156 408 CDD YTH 257 391 IPR007275 GO:0003723
Pumo2g00156 408 MobiDBLite consensus disorder prediction 183 251 - -
Pumo2g00156 408 Gene3D - 62 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00156 Pumo-Chr2 3486464 3495071 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo2g00156 YTH 1.4e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00156 K14404 - gmx:100802826 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00156 2 3486464 3495071 Pumo2g00156 2 3486464 3495071 ECH