Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo2g00156 | ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACGCGGCTCCCTCCGCCGCCGCCGCTGCCGGCCCGCTCGTCCAGCACGACGCCTCCGCGGCCGCCTCCGCCGTGTCCAACGGAGGCCCCGCCGCGCCCACCCCCTCCGCGGCGGACCCTGCGGGCGGCAACGTGCCCGGGCGGCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTGCGCAGCCTGTGCATGAAGGGCGACGCGTGCGGGTTCCTGCACCAGTACGACAAGGCGCGGATGCCGGTGTGCCGGTTCTTCAGACTCTACGGAGAGTGCAGAGAACAGGATTGCGTGTATAAACACACCAATGAAGACATCAAGGAGTGTAACATGTACAAGTTGGGGTTTTGTCCTAATGGGCCTGATTGTCGATATAGGCATGCAAAATCTCCTGCACCTCCACCTCCTGTTGAAGAGGTCCTTCAAAAGATCCAACATTTATATTCCTACAATTATAATTCATCCAACAAATTTTTCCAACAAAGGGGTGCTAATTATAATCAACAAGCTGAAAAATCCCAGCTTCCTCAAGGAACTAATTCTACAAACCAAGCAGTGACCGGAAAACCATTACCAGCAGAGTCGGGAAATGTCCAGCCACAGCAACAAGTTCAACAGTCTCAGCAGCAGGTCAACCAGAGCCAAATGCAAAATCCTGCTAATGGCCAGCCTAATCAAGCCAATAGAACTGCAACCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTTTGGGCAACTCAAAGGAGCAATGAATCCAAACTAAATGAAGCATTTGACTCTGTGGAAAATGTGATATTAATTTTCTCAGTCAACCGTACTAGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGGAACTGGAAATATGCTCATGGAACTGCACATTATGGGCGAAATTTCTCTGTTAAATGGTTGAAGTTATGTGAACTGTCATTCCACAAAACTCGCCATTTAAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAGCCCTCTATTGGAGAGCAGTTGGCATCCTTGCTTTATCTTGAGCCAGATAGTGAACTTATGGCTATCTCAGGTTGCAGCAGAGTCTAA | 1227 | 0.498 | MEDSEGVLSFDFEGGLDAAPSAAAAAGPLVQHDASAAASAVSNGGPAAPTPSAADPAGGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPAPPPPVEEVLQKIQHLYSYNYNSSNKFFQQRGANYNQQAEKSQLPQGTNSTNQAVTGKPLPAESGNVQPQQQVQQSQQQVNQSQMQNPANGQPNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISGCSRV | 408 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo2g00156 | 408 | Gene3D | ph1033 like domains | 234 | 394 | - | - | |
Pumo2g00156 | 408 | ProSiteProfiles | YTH domain profile. | 256 | 391 | IPR007275 | GO:0003723 | |
Pumo2g00156 | 408 | ProSiteProfiles | Zinc finger C3H1-type profile. | 66 | 93 | IPR000571 | GO:0046872 | |
Pumo2g00156 | 408 | Pfam | YT521-B-like domain | 256 | 390 | IPR007275 | GO:0003723 | |
Pumo2g00156 | 408 | PANTHER | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING | 35 | 397 | IPR045168 | - | |
Pumo2g00156 | 408 | SUPERFAMILY | CCCH zinc finger | 66 | 97 | IPR036855 | GO:0046872 | |
Pumo2g00156 | 408 | ProSiteProfiles | Zinc finger C3H1-type profile. | 120 | 147 | IPR000571 | GO:0046872 | |
Pumo2g00156 | 408 | SMART | c3hfinal6 | 66 | 92 | IPR000571 | GO:0046872 | |
Pumo2g00156 | 408 | SMART | c3hfinal6 | 94 | 120 | IPR000571 | GO:0046872 | |
Pumo2g00156 | 408 | SMART | c3hfinal6 | 122 | 146 | IPR000571 | GO:0046872 | |
Pumo2g00156 | 408 | FunFam | Cleavage and polyadenylation specificity factor 30 kDa subunit | 61 | 122 | - | - | |
Pumo2g00156 | 408 | MobiDBLite | consensus disorder prediction | 40 | 62 | - | - | |
Pumo2g00156 | 408 | CDD | YTH | 257 | 391 | IPR007275 | GO:0003723 | |
Pumo2g00156 | 408 | MobiDBLite | consensus disorder prediction | 183 | 251 | - | - | |
Pumo2g00156 | 408 | Gene3D | - | 62 | 123 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo2g00156 | Pumo-Chr2 | 3486464 | 3495071 | Dispersed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Pumo2g00156 | YTH | 1.4e-45 | CL0178 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo2g00156 | K14404 | - | gmx:100802826 | 753.436 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo2g00156 | 2 | 3486464 | 3495071 | Pumo2g00156 | 2 | 3486464 | 3495071 | ECH |