Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00143 ATGGCTTCTCCTACTCATGACCTCACAGATAATGAAGCTGATGGGCAGCAGCTGTCGGAATCACAAATGCAGCCTTTATCTGCAAATGGAATTTCTCATGCAGGAATTGGTACTCAGAATGTTCAGTATGCAACACCTCCACAGCTTGGAACTGGGCATGCTGTGGTACCGCCCACTTACCCATATCCAGATCCGTACTACAGAAGTATCTTTGCTCCCTATGATGCACAAACTTATCCCCCACAACCTTATGGTGGAAATCCAATGGTCCACCTTCAGTTAATGGGAATTCAACAAGCAGGTGTTCCTTTGCCAACTGATACAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATATTAAGACGAAGACAGTCCCGTGCTAAAGCTGAATCAGAAAAAAAAGCTGCAAGGAATCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCACTAAGAAGAGCAAGAGGATGTGGAGGTCGGTTTTTGAATTCAAAGAAAAATGAGGATAAACAGGATGAGGTTGCATCAACTGACGAATCACAGTCCAATATCAATCTCAATTCTGATAAAAATGAGCTTGCGCCATCGGATAGAACATCCTAA 618 0.4337 MASPTHDLTDNEADGQQLSESQMQPLSANGISHAGIGTQNVQYATPPQLGTGHAVVPPTYPYPDPYYRSIFAPYDAQTYPPQPYGGNPMVHLQLMGIQQAGVPLPTDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKAARNRKPYLHESRHLHALRRARGCGGRFLNSKKNEDKQDEVASTDESQSNINLNSDKNELAPSDRTS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00143 205 ProSiteProfiles NF-YA/HAP2 family profile. 109 169 IPR001289 GO:0003700|GO:0006355
Pumo2g00143 205 MobiDBLite consensus disorder prediction 1 22 - -
Pumo2g00143 205 MobiDBLite consensus disorder prediction 144 159 - -
Pumo2g00143 205 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 111 166 IPR001289 GO:0003700|GO:0006355
Pumo2g00143 205 MobiDBLite consensus disorder prediction 182 199 - -
Pumo2g00143 205 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 13 202 IPR001289 GO:0003700|GO:0006355
Pumo2g00143 205 ProSitePatterns NF-YA/HAP2 subunit signature. 114 134 IPR018362 GO:0003677|GO:0016602
Pumo2g00143 205 PRINTS CCAAT-binding transcription factor subunit B signature 143 166 IPR001289 GO:0003700|GO:0006355
Pumo2g00143 205 PRINTS CCAAT-binding transcription factor subunit B signature 112 134 IPR001289 GO:0003700|GO:0006355
Pumo2g00143 205 Gene3D - 109 170 - -
Pumo2g00143 205 MobiDBLite consensus disorder prediction 127 205 - -
Pumo2g00143 205 MobiDBLite consensus disorder prediction 167 181 - -
Pumo2g00143 205 SMART cbf3 108 169 IPR001289 GO:0003700|GO:0006355
Pumo2g00143 205 MobiDBLite consensus disorder prediction 127 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00143 Pumo-Chr2 3101365 3107969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00143 1 205 CCAAT-HAP2 Transcription Factor Family AT1G30500 56.522 2.60e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pumo2g00143 CBFB_NFYA 7.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00143 K08064 - gmx:100809036 380.178