Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00142 ATGAATAGCAAGGCTCGGAAAAACAGTAACAAAACCCAGAAACAAAAGATTCGAAATTGGCAAAGGGAGGTTTTCGGTTACAGAGCACTGGAAGAAAAAAGGCAAAAGCGAAGAAGAACAGCAGCAATAAGCAAAAGGGTAGGGTTTGTGCCGTTGTGTGTTGTGGTGCGAGGGAAGAAGAAGAAGAAGAAGATGGTGTCAGGTTCTGGAATCTGCGCAAAGAGGGTGGTGGTGGACGCGCGCCACCACATGCTGGGTCGTCTAGCGTCGATCGTGGCGAAGGAGCTTCTGAACGGTCAGAGAGTGGTGGTTGTGCGGTGTGAAGAGATTTGCATCTCTGGGGGTCTCGTGAGGCAGAAAATGAAGTACATGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCATGGCCCCATCCACTTCCGTGCCCCTGCCAAGATTTTCTGGCGCACAGTTCGTGGAATGATACCGCACAAGACAAAACGTGGGGAAGCTGCTCTTGCTCGTTTGAAGGTTTATGAAGGAATCCCTCCTCCATATGACAAGACCAAGAGAATGGTTGTTCCTGATGCTCTCAAGGTGTTGAGGCTTCAGAAAGGACACAAGTACTGTGTGCTGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGACACCATCAGGGAGCTGGAGAAGAAGAGAAAGGAAAAGGCAGCGTTGGTTTATGAGAGAAAGAAGCAACTCAACAAATTAAGGGTGAAAGCTGAGAAGGTTGCTGAAGAGAAGCTCGGTTCCCAACTTGATATTCTTGCTCCTGTTAAGTACTGA 813 0.4871 MNSKARKNSNKTQKQKIRNWQREVFGYRALEEKRQKRRRTAAISKRVGFVPLCVVVRGKKKKKKMVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGEAALARLKVYEGIPPPYDKTKRMVVPDALKVLRLQKGHKYCVLGRLSSEVGWSYYDTIRELEKKRKEKAALVYERKKQLNKLRVKAEKVAEEKLGSQLDILAPVKY 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00142 270 Gene3D - 220 270 - -
Pumo2g00142 270 ProSitePatterns Ribosomal protein L13 signature. 153 176 IPR023563 GO:0003735|GO:0005840|GO:0006412
Pumo2g00142 270 Pfam Ribosomal protein L13 74 179 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pumo2g00142 270 Hamap 50S ribosomal protein L13 [rplM]. 75 199 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pumo2g00142 270 NCBIfam 50S ribosomal protein L13 76 218 IPR005755 GO:0003735|GO:0006412|GO:0015934
Pumo2g00142 270 Gene3D Ribosomal protein L13 72 218 IPR036899 GO:0003735|GO:0005840|GO:0006412
Pumo2g00142 270 PANTHER RIBOSOMAL PROTEIN L13 65 252 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pumo2g00142 270 FunFam 60S ribosomal protein L13a-4 72 218 - -
Pumo2g00142 270 CDD Ribosomal_L13 76 177 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pumo2g00142 270 FunFam 60S ribosomal protein L13a 219 270 - -
Pumo2g00142 270 SUPERFAMILY Ribosomal protein L13 76 218 IPR036899 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00142 Pumo-Chr2 3098787 3101644 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00142 65 270 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 89.806 5.21e-140 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00142 K02872 - gmx:100499978 397.512