Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00139 ATGGAACTTGCAAGACCTGCCTCAAGTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCTGCCAACATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACTCATATATCAAAGGTTTTGTCTGTGACATTGGATGATTGGTCAGAGGATGAAATAGATGCAATGATGGAAGTTGGGGGAAATGCTTCTGCTAATTCAATTTATGAAGCTTATTTTCCTGAAGGATATACGAAACCCAGACCAGATGCTGGTCATGAGCAGCGTTCAAAGTTCATACGGTCAAAATATGAATTACAAGAATTTCTGAAACCGAGTTTGCGCATTGTGTCTGGAAAAAGCAATCTACAATCAAGTTCTGCCAAAAGTAGTATTATGGATAGTTTTAAAAGTACTAGTAGTTCACAGAGAATGGAAGGTATGGTGGAATTTATTGGAATGTTGAAGGTGAAAGTTATTAAAGGCACAAATTTAGCTATCAGAGATATAAAGTCAAGTGATCCATATGTTATTTTGAGCCTTGGCCAGCAGACTGTCCAGACAACTGTAGTGAGGAGTAACTTGAATCCAGTCTGGAATGAGGAATACATGCTGTCTGTTCCCGAGCATTATGGACCGATGAAATTGCAAGTATATGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCAGACATTGATCTTCAATCTCTGATAACATCTGCTATGGCATTTGGAGATGCTGGAATGTTTGGTGATATGCAGATAGGAAAATGGTTAAAATCCGATGACAATCCCCTTATTGAGGATAGCACAGTCAATATTGTTGATGGTAAGGTTAAACAAATGATGTCACTCAAGCTCCAGAATGTTGAATCTGGAGAATTAGATCTTGAACTCGAGTGGATTCCTCTTGATCAATAG 975 0.3826 MELARPASSRRKLKDLLLQSDNRLCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDDWSEDEIDAMMEVGGNASANSIYEAYFPEGYTKPRPDAGHEQRSKFIRSKYELQEFLKPSLRIVSGKSNLQSSSAKSSIMDSFKSTSSSQRMEGMVEFIGMLKVKVIKGTNLAIRDIKSSDPYVILSLGQQTVQTTVVRSNLNPVWNEEYMLSVPEHYGPMKLQVYDHDTFSADDIMGEADIDLQSLITSAMAFGDAGMFGDMQIGKWLKSDDNPLIEDSTVNIVDGKVKQMMSLKLQNVESGELDLELEWIPLDQ 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00139 324 SUPERFAMILY ArfGap/RecO-like zinc finger 10 127 IPR037278 -
Pumo2g00139 324 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Pumo2g00139 324 Gene3D C2 domain 167 324 IPR035892 -
Pumo2g00139 324 CDD ArfGap 13 119 - -
Pumo2g00139 324 SMART arf_gap_3 10 132 IPR001164 GO:0005096
Pumo2g00139 324 Pfam Putative GTPase activating protein for Arf 11 126 IPR001164 GO:0005096
Pumo2g00139 324 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 8 324 IPR044518 GO:0005096|GO:0005543
Pumo2g00139 324 SMART C2_3c 169 264 IPR000008 -
Pumo2g00139 324 FunFam Arf-GAP with dual PH domain-containing protein 1 5 133 - -
Pumo2g00139 324 Pfam C2 domain 169 258 IPR000008 -
Pumo2g00139 324 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 164 261 IPR035892 -
Pumo2g00139 324 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Pumo2g00139 324 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Pumo2g00139 324 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Pumo2g00139 324 CDD C2_ArfGAP 167 311 - -
Pumo2g00139 324 ProSiteProfiles C2 domain profile. 149 265 IPR000008 -
Pumo2g00139 324 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 124 IPR001164 GO:0005096
Pumo2g00139 324 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 166 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00139 Pumo-Chr2 3050254 3056688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00139 3 324 C2H2 Transcription Factor Family AT4G05330 73.860 0.0 515
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00139 2 3050254 3056688 Pumo2g00139 2 3050254 3056688 ECH