Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00120 ATGGAGATAGTCCGCCAGTGCCCACATCCAAATGAAAGCGAAAGACGTCAAATAGCCCAAGAACTTGGGCTTGAGCCAAAACAAGTAAAATTTTGGTTTCAGAATAAAAGGACTCAAAGAAAGACTCTATCTGAGCGAGCAAATAACAATGCCCTTCGTGTTGAGAATGAAAGAATGCACAACGAAAACCTCGTACTGAGAGAGGCATTGAAGAATATAATTTGCTCTACTTGTGGGGGTCCACACAATGCAGATGAAAGGCATGAACTTTGTCTAGAACAACTTCGTCTTGAAAATGCTCGTCTAAAAGCAGAGCGTGAGAAGTTATCTAATCTTCTTACACAGTACATGGACAAACCAATTTCTGAACTAAACATGGAGTCTCCTATCAGAGGATCTTCATCACGTGGTCCATTACTAGGAAGTTCTCAAAGACCAAGAGCTAGAAGATCATCTCGTATGAATCTTGGAGCTTCAGCAAGTCATTCATTTCAAGATGAAGATACCATGTCAAACCCAAACCCAGGGAACAAAATAACACATATGGAAAAAGCAATGATGTCACAAATTGCAGTGTCTGCTAAGGATGAATTGCTCAAGCTTCTGTGCACGAATGAGCCCTTGTGGGTCAAGTCTTCAACTGATCAGAGATATGTTCTTCATCTTGAAAGCTACGAAAATTCACATGCTCCAGCACTTGAAAATTCACTAAACCAAGAAGAGATTGGTGGAAGTTCAAGTCATGATCCAAGTCTTGATATGCAAATTATGGATGGTGACCATAACTTATTGGGAAGTGAAGGTTTAGAAAAAGCCCTTATGTCAAAGGTTGCTGCTGCCGCAATGGAGGAATTGGTTAGGCTTCTTCGGATTAATGAGCCTTTTTGGATCAATAAGTCTTCAACTCAAGATGGGAAGCTCAGTCTTCAGCATGAAAATTATAAAAAAATGTTCCCAAGGACCAATCATTTCAAAGGTGCAAATGTGCTTGTAGAAGCAACAAAAGATTCAGGAATAGTGAGCATTAATAGCATTCAACTAGTTGACATGTTTCTGGATTCGAGCATGATGAATCCATCTTTTCAGGACAAATGGGTTAATTTGTTCCCAACAATTGTTACAAAAGCAGAAACAATGCAAGTACTTGAAAATGGTTTGGTAGGAAGCCGAAGTGGAGCCCTGCAGCTGATGTTTGAACAAATGCATGTTCTTTCACCTTTAGTGCAACCTCGCGAATTTCAATTCCTTCGCTATTGTCAGCTAATTGAAGAAGGTGTATGGGTGATAGCAGATGTGTCATTTGATTCCTTTAGACAAAAAACCTCTATTTTTCACTCTTGGAGACATCCCTCTGGATGCATGATTCAAGAAATGCCTAATGGGTGTTCCATGGTTACTTGGGTTGAACATGTGGAAGTGGATGATAAGATCCAAACGCATCAGCTATACAAAGAACTTATTGGTACAGGAATTGCATACGGCGCAGAAAGATGGATTATGGAACTTCAAAGAATTTGCGAGAGATTTGCTTGCTTTTATGTTGAAAGGATACCTAATCATGACTCTGGCGGAGTGATCAATTCTCTTGAAGGAAGGAGGAGTGTAATGAATTTCTCTCATCGTATGATCAAAATCTTTTGTGAAAGTTTAACCATGTCAGGTAACTTGGACTTCCCACATTTAGATATGGAGAGCAATAGCGGGGTGAGGGTTGCAATTCGCAAAAACAGAAACCTTGGTCAACCAAAGGGCATGATTATTGTAGCTGCTACTACCATTTGGCTTCCTCTCCATTACATGAAAGTTTTTGAGTTCTTCACAGATGATAGAAGACGGACTCAGTGGGATGTTCTTTGCTGTAGAAGTCAAGCGAACAAGGTTGCACACATCTCAAATGGAATTCATCCTGGCAATTGTATATCTATTTTTCAGCCCTTCATCCCTAGTGAGAACAATGCGCTGATTCTTCAAGAGAGTTTCACAACTCCCATGGGATCGTATGTTGTATATGCTCCAACTGATGTAGCAACTATAAATTCGGCCATAAAAGGAGAAGACTCTTCAATGTTACCAGTTCTTCCATCAGGTTTTGTCATCTCTGCAGATGGTGAACCAAATGCAGCTTTGGGAGCATTTAATACTTCGGATATTGAAAGATTGGGAGGCTCATTACTCACTGTGGCTTTCCAAATACTCGCTTGTAGTCAAGATGGAATCAATATGCCAAATATGGACTCTGTGGCAGCTGTGAACACCCTTTTAACCTCAACAATCCTAAAAGTCAAGGATGCTTTGAATTGCAACAACTTGGAGTGA 2316 0.4024 MEIVRQCPHPNESERRQIAQELGLEPKQVKFWFQNKRTQRKTLSERANNNALRVENERMHNENLVLREALKNIICSTCGGPHNADERHELCLEQLRLENARLKAEREKLSNLLTQYMDKPISELNMESPIRGSSSRGPLLGSSQRPRARRSSRMNLGASASHSFQDEDTMSNPNPGNKITHMEKAMMSQIAVSAKDELLKLLCTNEPLWVKSSTDQRYVLHLESYENSHAPALENSLNQEEIGGSSSHDPSLDMQIMDGDHNLLGSEGLEKALMSKVAAAAMEELVRLLRINEPFWINKSSTQDGKLSLQHENYKKMFPRTNHFKGANVLVEATKDSGIVSINSIQLVDMFLDSSMMNPSFQDKWVNLFPTIVTKAETMQVLENGLVGSRSGALQLMFEQMHVLSPLVQPREFQFLRYCQLIEEGVWVIADVSFDSFRQKTSIFHSWRHPSGCMIQEMPNGCSMVTWVEHVEVDDKIQTHQLYKELIGTGIAYGAERWIMELQRICERFACFYVERIPNHDSGGVINSLEGRRSVMNFSHRMIKIFCESLTMSGNLDFPHLDMESNSGVRVAIRKNRNLGQPKGMIIVAATTIWLPLHYMKVFEFFTDDRRRTQWDVLCCRSQANKVAHISNGIHPGNCISIFQPFIPSENNALILQESFTTPMGSYVVYAPTDVATINSAIKGEDSSMLPVLPSGFVISADGEPNAALGAFNTSDIERLGGSLLTVAFQILACSQDGINMPNMDSVAAVNTLLTSTILKVKDALNCNNLE 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00120 771 ProSiteProfiles 'Homeobox' domain profile. 1 43 IPR001356 GO:0003677
Pumo2g00120 771 SUPERFAMILY Homeodomain-like 6 46 IPR009057 -
Pumo2g00120 771 Coils Coil 92 119 - -
Pumo2g00120 771 SMART START_1 276 508 IPR002913 GO:0008289
Pumo2g00120 771 SMART HOX_1 1 47 IPR001356 GO:0003677
Pumo2g00120 771 ProSitePatterns 'Homeobox' domain signature. 18 41 IPR017970 GO:0000981|GO:0006355
Pumo2g00120 771 Gene3D - 275 489 IPR023393 -
Pumo2g00120 771 CDD homeodomain 6 41 IPR001356 GO:0003677
Pumo2g00120 771 CDD START_ArGLABRA2_like 271 507 - -
Pumo2g00120 771 ProSiteProfiles START domain profile. 180 226 IPR002913 GO:0008289
Pumo2g00120 771 MobiDBLite consensus disorder prediction 126 178 - -
Pumo2g00120 771 Pfam Homeodomain 6 41 IPR001356 GO:0003677
Pumo2g00120 771 Pfam START domain 277 508 IPR002913 GO:0008289
Pumo2g00120 771 MobiDBLite consensus disorder prediction 127 178 - -
Pumo2g00120 771 SUPERFAMILY Bet v1-like 565 731 - -
Pumo2g00120 771 Gene3D - 3 45 - -
Pumo2g00120 771 ProSiteProfiles START domain profile. 267 511 IPR002913 GO:0008289
Pumo2g00120 771 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 249 766 IPR042160 -
Pumo2g00120 771 SUPERFAMILY Bet v1-like 270 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00120 Pumo-Chr2 2849184 2869697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00120 217 766 Homeobox Transcription Factor Family AT1G73360 42.807 4.92e-141 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo2g00120 START 3.5e-34 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00120 K09338 - gmx:100795075 928.702