Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00113 ATGGATACCCGCAAGAGGGGAAGACCCGAACCCGGCTTCAGCTTAAATGGCGGATTCAAGAAATCCAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGGCATGTACCAAGTTTTTCAGCACTGCTGGTTGCCCATTTGGCGAGGGCTGCCACTTCTTGCACTATGTTCCTGGTGGTTATAATGCAGTTGCCCATATGATGAATCTAAAACCTGCAGCACCTCCAGCGTCAAGAAATGTTGCATCCATGCCTCCTGTACCTAATGGGTCCACACCACCTGCCATTAAGACCCGCATATGCAACAAGTTTAATACTGCTGAAGGTTGCAAATTTGGTGACAAATGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAGCATATTGCTCCATCATTTGATGATCATCGTGCCATGGGGCCCACTGGACCAGGTCGTCTTTCTGGTCGAATGGAGCCTCCCCCTGGTCCTGCTGCAAGTACGGCCAAGATCAGCGTAGAAGCTTCCCTGGCTGGAGCAATCATTGGGAAGGGTGGTGTGAACTCAAAACAGATCTGCCGCCAAACTGGAGCCAAACTTTCAATTCGAGAGCATGAATCTGACCCAAATCTTAGAAACATTGAACTTGAGGGAAGTTTTGAGCAAATCAAGGAAGCAAGTAACATGGTGAAGGATTTACTATTGACCCTGCAAATGTCTGCACCACCAAAAACAACCCCAGGTGTTCCTGGCGCACCTGCCCATCATGGAAGCAATTTTAAGACGAAGCTGTGTGAGAATTTTACAAAAGGATCTTGCACGTTTGGAGAAAGATGTCACTTTGCACATGGTTTTACAGCTAAAGGATTAGAGAATTAG 870 0.4701 MDTRKRGRPEPGFSLNGGFKKSKQEMESLSTGVGSKSKACTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLKPAAPPASRNVASMPPVPNGSTPPAIKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHRAMGPTGPGRLSGRMEPPPGPAASTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTLQMSAPPKTTPGVPGAPAHHGSNFKTKLCENFTKGSCTFGERCHFAHGFTAKGLEN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00113 289 Pfam RNA-binding, Nab2-type zinc finger 40 59 - -
Pumo2g00113 289 Gene3D - 255 283 - -
Pumo2g00113 289 Gene3D - 93 131 - -
Pumo2g00113 289 ProSiteProfiles Zinc finger C3H1-type profile. 256 283 IPR000571 GO:0046872
Pumo2g00113 289 PANTHER CCCH ZINC FINGER/TIS11-RELATED 22 152 IPR045877 GO:0003729
Pumo2g00113 289 Pfam KH domain 166 228 IPR004088 GO:0003723
Pumo2g00113 289 SUPERFAMILY CCCH zinc finger 97 130 IPR036855 GO:0046872
Pumo2g00113 289 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Pumo2g00113 289 SMART c3hfinal6 256 282 IPR000571 GO:0046872
Pumo2g00113 289 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Pumo2g00113 289 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Pumo2g00113 289 MobiDBLite consensus disorder prediction 1 31 - -
Pumo2g00113 289 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Pumo2g00113 289 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 257 282 IPR000571 GO:0046872
Pumo2g00113 289 SUPERFAMILY CCCH zinc finger 255 282 IPR036855 GO:0046872
Pumo2g00113 289 CDD KH-I_AtC3H36_like 166 231 - -
Pumo2g00113 289 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 160 235 IPR036612 GO:0003723
Pumo2g00113 289 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Pumo2g00113 289 Gene3D K Homology domain, type 1 160 254 IPR036612 GO:0003723
Pumo2g00113 289 ProSiteProfiles Type-1 KH domain profile. 163 227 - -
Pumo2g00113 289 FunFam Zinc finger CCCH domain-containing protein 94 131 - -
Pumo2g00113 289 SMART kh_6 162 232 IPR004087 GO:0003676
Pumo2g00113 289 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00113 Pumo-Chr2 2350864 2351733 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo2g00113 KH_1 3.5e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00113 - - gmx:100803981 566.614