Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00112 ATGGATACCCGCAAGAGGGGAAGACCCGAACCCGGCTTCAGCTTAAATGGCGGATTCAAGAAATCCAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGGCATGTACCAAGTTTTTCAGCACTGCTGGTTGCCCATTTGGCGAGGGCTGCCACTTCTTGCACTATGTTCCTGGTGGTTATAATGCAGTTGCCCATATGATGAATCTAAAACCTGCAGCACCTCCAGCGTCAAGAAATGTTGCATCCATGCCTCCTGTACCTAATGGGTCCACACCACCTGCCATTAAGACCCGCATATGCAACAAGTTTAATACTGCTGAAGGTTGCAAATTTGGTGACAAATGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAGCATATTGCTCCATCATTTGATGATCATCGTGCCATGGGGCCCACTGGACCAGGTCGTCTTTCTGGTCGAATGGAGCCTCCCCCTGGTCCTGCTGCAAGTACGCCAAGATCAGCGTAG 510 0.4941 MDTRKRGRPEPGFSLNGGFKKSKQEMESLSTGVGSKSKACTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLKPAAPPASRNVASMPPVPNGSTPPAIKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHRAMGPTGPGRLSGRMEPPPGPAASTPRSA 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00112 169 Gene3D - 93 131 - -
Pumo2g00112 169 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Pumo2g00112 169 MobiDBLite consensus disorder prediction 1 31 - -
Pumo2g00112 169 PANTHER CCCH ZINC FINGER/TIS11-RELATED 22 138 IPR045877 GO:0003729
Pumo2g00112 169 FunFam Zinc finger CCCH domain-containing protein 94 131 - -
Pumo2g00112 169 MobiDBLite consensus disorder prediction 136 169 - -
Pumo2g00112 169 MobiDBLite consensus disorder prediction 152 169 - -
Pumo2g00112 169 SUPERFAMILY CCCH zinc finger 97 130 IPR036855 GO:0046872
Pumo2g00112 169 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Pumo2g00112 169 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Pumo2g00112 169 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Pumo2g00112 169 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Pumo2g00112 169 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00112 Pumo-Chr2 2298360 2298869 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00112 35 137 C3H Transcription Factor Family AT1G68200 24.272 1.02e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo2g00112 zf-CCCH 3.4e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00112 - - gmx:100803981 341.273