Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00104 ATGTGTATTCGAATCCTAGGAGCTAGTAATCGACGATATGCTTATATTGGTGACATTGTTGTTGCTGTAATCAAACAAGCAGTACCAAATACGAACTTAGAAAAATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGTAGCAACGATGTACGAGGTCGGGTGATTGCTTGGTCCTCCGCCGGTACTTGTGGATTCAAGGGTACACGAAGGGGGACACCTTTTGCCGCTCAAACTGCAGCAGGAAATGCTATTCGAACAGTATCGGATCAAGGCATGCAACGAGCAGAAGTCATGATAAAAGGTCCTGGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGTATACTATTAAATTTTATACGAGATGTAACTCCTATGCCACATAATGGATGTAGGTCTCCTAAAAAAAGACGTGTGTAA 447 0.4228 MCIRILGASNRRYAYIGDIVVAVIKQAVPNTNLEKSEVIRAVIVRTCKELKRSNDVRGRVIAWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGCRSPKKRRV 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00104 148 ProSitePatterns Ribosomal protein S11 signature. 116 138 IPR018102 -
Pumo2g00104 148 SMART Ribosomal_L14_2 1 93 IPR000218 GO:0003735|GO:0005840|GO:0006412
Pumo2g00104 148 Pfam Ribosomal protein S11 54 147 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pumo2g00104 148 SUPERFAMILY Translational machinery components 54 148 - -
Pumo2g00104 148 Gene3D Ribosomal protein S11 12 148 IPR036967 GO:0003735|GO:0005840|GO:0006412
Pumo2g00104 148 Hamap 30S ribosomal protein S11 [rpsK]. 11 148 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pumo2g00104 148 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 55 146 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pumo2g00104 148 SUPERFAMILY Ribosomal protein L14 1 56 IPR036853 GO:0003735|GO:0005840|GO:0006412
Pumo2g00104 148 Pfam Ribosomal protein L14p/L23e 1 55 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00104 Pumo-Chr2 2122451 2124642 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00104 54 138 Cytoplasmic Ribosomal Protein Gene Family AT2G36160 31.915 9.86e-06 41.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00104 K02948 - gmx:3989330 191.045