Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00101 ATGCTCGGCATTGCTCCGGAAACCTTCGCTCTCGGCACCACCGACGTTCGCTCCCTCCTCACTCACTCCAGTGCTCAACTCCTCCAGAAGGCCTTCACAGAACGCGAAATTAGCCTCACGAACCCTATTTTGATCCATTCACGAACCTCCGGCAAGCCTTTCCACGGCATCCTCCACCAAATCGACGCCGGAATCGTCATCGATCTGGAGCCTGCAATTGCCGGCGCCAATCAGTCACAGAAACTCTCGGAGCTCCTATCTCTTCCCGGCGGTGACGTTAAGCTTCTCTGCAACACCGTCGTTGAGAGCGTTAGAGAAATGACAGGGTACGATAGAGTTATGGTGTATAAATTTCACGAGGATGATCACGGAGAGGTTGTAGCTGAGAGCAAGAGACCCGATTTGGAACCTTACATTGGTTTGCATTATCCGGCTACCGATATTCCTGAGGCTTCTAGGGTTTCGTTTATGCAGAACAGGGTTAGTAGGATGATTGTGGATTGTCATGCTTCTCCCGTGAGGATGGTGCAGGATGAGACCCTTGTGCAGCAGCCTCTGTGTTTGGTTGGATCTACGCTTCGCGCGCCTCACGGTTGTCATGTTCAGTACATGGCTAACATGGGGTCTATTGCCACGTTGGTGATGGCTGTTATTGTTAATGAGAATGGTATTGGTGACGACGAGAGTTGCAAGAAGAAGCTGTGGGGTCTCGTTATTTGCCACCATGGTTCTCCTAAGTGTGTTCCTTTTCCTTTGAGGAGTGCTTGTGAGTCCCTGGTTCAGGCCTTTGGGGCGCGATTGAACATGGAGAAACGGGTTTTGAGGACGCAGGAGTCCCTGGTTCACGTTCCCAGTTGA 858 0.5152 MLGIAPETFALGTTDVRSLLTHSSAQLLQKAFTEREISLTNPILIHSRTSGKPFHGILHQIDAGIVIDLEPAIAGANQSQKLSELLSLPGGDVKLLCNTVVESVREMTGYDRVMVYKFHEDDHGEVVAESKRPDLEPYIGLHYPATDIPEASRVSFMQNRVSRMIVDCHASPVRMVQDETLVQQPLCLVGSTLRAPHGCHVQYMANMGSIATLVMAVIVNENGIGDDESCKKKLWGLVICHHGSPKCVPFPLRSACESLVQAFGARLNMEKRVLRTQESLVHVPS 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00101 285 PRINTS Phytochrome signature 20 42 IPR001294 GO:0006355|GO:0009584
Pumo2g00101 285 PRINTS Phytochrome signature 194 215 IPR001294 GO:0006355|GO:0009584
Pumo2g00101 285 ProSitePatterns Phytochrome chromophore attachment site signature. 194 203 IPR013516 -
Pumo2g00101 285 Pfam PAS fold 1 72 IPR013654 GO:0006355
Pumo2g00101 285 SUPERFAMILY PYP-like sensor domain (PAS domain) 12 72 IPR035965 -
Pumo2g00101 285 PANTHER TWO-COMPONENT HISTIDINE KINASE 19 222 - -
Pumo2g00101 285 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 92 261 IPR016132 -
Pumo2g00101 285 Gene3D PAS domain 2 197 - -
Pumo2g00101 285 Pfam GAF domain 93 270 IPR003018 GO:0005515
Pumo2g00101 285 Gene3D - 80 275 IPR029016 -
Pumo2g00101 285 SMART gaf_1 92 281 IPR003018 GO:0005515
Pumo2g00101 285 SUPERFAMILY GAF domain-like 91 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00101 Pumo-Chr2 2076906 2078563 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00101 6 280 Histidine Kinase Gene Family AT2G18790 66.337 1.94e-128 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00101 K12121 - gmx:100799831 407.142