Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00099 ATGGCTTCAGCGAGCGGAGCAGCGAACTCCTCGGTCCCTCCGCCGCAGCAGCAGCAGCAGCAGCAGCAAATCCACACTTCGCGAACGAAGCTGAGCCACCACAACGTGGACTCCATGAGCAAAGCCATCGCGCAGTACACGGAGGACGCGCGGCTCCACGCCGTGTTCGAGCAGTCCGGCGAGTCGGGAAGGTCCTTCGACTACTCCCAATCAATCCGCATCACATCGGAGTCCGTTCCGGAGCAGCAGATAACGGCTTACCTCCTCAAAATCCAGCGCGGCGGCTTCATCCAGCCGTTCGGCTCCATGATCGCCGTCGACGAGCGGTCCTTCCGCATCCTCGCCTACTCCGAGAACGCCCGCGACATGCTCGGCATTACTCCGCAGTCCGTCCCCTCCCTCGACGACGACAAGCTCGACGCCGCCTTCGCGCTCGGCGCCGATGTTCGAACCCTCTTCACCAACTCCAGCGCGCTTCTCCTCGAAAAGGCCTTCTCCGCGCGCGAAATTAGCCTCATGAACCCTATCTGGATCCACTCCAGAACCTCCGGGAAGCCTTTCTACGGCATCCTCCACCGGATTGACGTCGGAATTGTCATCGATTTGGAGCCTGCACGGACCGAGGATCCCGCGCTCTCCATCGCCGGAGCCGTACAGTCGCAGAAGCTCGCGGTTCGCGCGATTTCGCAGCTGCAGTCTCTCCCCGGCGGTGATGTGAAGCTTCTCTGTGACACTGTTGTTGAGAGTGTTAGGCAATTGACAGGGTATGATAGGGTTATGGTTTATAAGTTTCATGAGGATGAGCATGGGGAGGTTGTTGCTGAGAGTAAGAGGGCTGATTTGGAGCCTTACATTGGTTTGCATTATCCCGCTACTGATATTCCCCAGGCTTCTAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGCCATGCTTCTGCTGTGACGGTGGTGCAGGATGAGGCTCTTGTGCAGCCTCTCTGTTTGGTTGGGTCCACTCTGAGGGCGCCACACGGTTGTCATGCTCAGTACATGGCTAACATGGGGTCGATTGCGTCGTTGGTGATGGCTGTTATTATCAATGGGAATGATGAGGAAGGTGCTGGTGGCCGGAGCTCGATGAGGCTGTGGGGGCTTGTTGTTTGCCATCATACCTCTGCTAGGTGTATTCCTTTTCCTTTGAGGTATGCTTGTGAGTTTCTGATGCAGGCGTTTGGGCTGCAGTTGAACATGGAGCTTCAGTTGGCGGCGCAGTCGTTGGAGAAGCGGGTTTTGAGGACGCAGACTCTGTTGTGTGATATGCTTCTTAGGGACTCGCCTACTGGCATTGTTACTCAGAGTCCTAGTATTATGGACTTGGTGAAGTGTGATGGGGCTGCTCTTTATTACCAAGGGAACTATTATCCGTTGGGTGTGACTCCGACTGAGGCTCAGATAAGGGATATTATTGAGTGGTTGTTGGCCTTTCATGGAGATTCGACCGGTTTGAGTACTGATAGTCTTGCTGATGCTGGATATCCTGGGGCTGCCTCGCTTGGGGATGCGGTTTGTGGGATGGCAGTTGCTTATATCACAGAGAAGGATTTTCTCTTCTGGTTCAGGTCACACACGGCAAAGGAGATCAAGTGGGGTGGTGCAAAGCATCATCCTGAGGACAAGGATGATGGGCAGAGAATGCATCCCCGTTCTTCCTTCAAGGCATTCTTGGAAGTGGTAAAGAGCCGTAGCTTGCCGTGGGAGAATGCGGAAATGGATGCAATTCACTCTTTGCAGCTTATTCTGCGTGACTCATTTAGAGATGCTGAGCATAGCAATTCTAAGGCTGTTGTGGATCCCCGTGTGACGGAACTGGAGTTGCAAGGGGTTGATGAACTAAGTTCTGTGGCCAGAGAGATGGTTAGATTGATAGAAACAGCCACTGCTCCTATATTTGCTGTTGATGTTGATGGCCACATAAATGGGTGGAACGCAAAGGTTTCAGAATTGACAGGACTCCCAGTTGAGGAGGCTATGGGGAAGTCTTTGGTTCGCGATCTTGTGTTTAAGGAGTCTGAAGAAACTGTGGGCAAACTTCTTTCTCGTGCTTTGAAAGGTGAAGAAGATAAGAATGTTGAGATAAAAATGAGGACGTTTGGCCCAGAACATCAAAATAAGGCAGTTTTTGTAGTGGTGAATGCTTGCTCCAGCAAGGATTATACGAATAATATAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTGGTCAAAAAATGGTGATGGACAAATTCATCAACATACAAGGTGACTACAAGGCTATTGTACATAGTCCAAATCCTTTGATCCCTCCCATTTTTGCATCGGACGATAACACATGTTGCTTAGAGTGGAACACTGCAATGGAAAAACTTACTGGTTGGGGCCGTGCGGATGTCATTGGAAAAATGTTGGTGGGAGAGGTTTTTGGTAGTTGCTGTCAGTTGAAGGGTTCAGATTCAATAACAAAGTTTATGATTGTCTTACACAATGCGCTTGGTGGACAAGATACAGATAAATTCCCTTTTTCATTTCTTGATCGCCATGGAAAGTATATACAAACTTTCCTGACTGCAAATAAGAGGGTTAACATGGATGGTCAGATCATTGGGGCTTTTTGCTTTTTGCAAATTGTGAGTCCTGAACTTCAACAGGCTCTGAAGGCACAGAGACAACAAGAGAAGAATTCCTTTACTAGGATGAAAGAGTTAGCTTATATTTGTCAAGGAGTAAAGAATCCTTTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGTCTACAGGCTTGACCGATGAGCAAAAGCAGTTTCTTGAGACTAGTGCTGCTTGTGAGAAGCAAATGTTAAAGATAATACGTGACGTTGATCTTGAAAGCATCGAGGACGGGTCCCTGGAGCTTGAAAAGGGGGAATTCTTGCTTGGAAATGTCGTAAATGCAGTTGTTAGCCAAGTAATGTTAATGTTGAGAGAAAGAAATTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTTTATGGTGATCAATTGAGGATTCAACAAGTGTTGTCTGATTTCTTATTGAATATAGTGCGGTATGCACCATCTCCAGATGGCTGGGTAGAGATTCATGTACATCCAAGAATAAAACAAATCTCAGATGGGCTTTCTCTTCTCCATGCTGAATTTAGAGTGGTATGTCCTGGTGAAGGTCTTCCTCCTGAACTGATTCAAGACATGTTCAATAACAGTCGGTGGGTGACTCAAGAAGGTTTAGGGCTGAGCATGAGCAGGAAGATTCTAAAGCTAATGAACGGTGAAGTGCAGTATATCAGGGAGGCAGAACGGTGCTACTTCTATGTTCTTCTTGAACTACCTTTGACACGGAGAAGCTCTAAAAAGTGTTAA 3420 0.4827 MASASGAANSSVPPPQQQQQQQQIHTSRTKLSHHNVDSMSKAIAQYTEDARLHAVFEQSGESGRSFDYSQSIRITSESVPEQQITAYLLKIQRGGFIQPFGSMIAVDERSFRILAYSENARDMLGITPQSVPSLDDDKLDAAFALGADVRTLFTNSSALLLEKAFSAREISLMNPIWIHSRTSGKPFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDTVVESVRQLTGYDRVMVYKFHEDEHGEVVAESKRADLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASAVTVVQDEALVQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDEEGAGGRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGNYYPLGVTPTEAQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAEHSNSKAVVDPRVTELELQGVDELSSVAREMVRLIETATAPIFAVDVDGHINGWNAKVSELTGLPVEEAMGKSLVRDLVFKESEETVGKLLSRALKGEEDKNVEIKMRTFGPEHQNKAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKMVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNTAMEKLTGWGRADVIGKMLVGEVFGSCCQLKGSDSITKFMIVLHNALGGQDTDKFPFSFLDRHGKYIQTFLTANKRVNMDGQIIGAFCFLQIVSPELQQALKAQRQQEKNSFTRMKELAYICQGVKNPLSGIRFTNSLLESTGLTDEQKQFLETSAACEKQMLKIIRDVDLESIEDGSLELEKGEFLLGNVVNAVVSQVMLMLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLSDFLLNIVRYAPSPDGWVEIHVHPRIKQISDGLSLLHAEFRVVCPGEGLPPELIQDMFNNSRWVTQEGLGLSMSRKILKLMNGEVQYIREAERCYFYVLLELPLTRRSSKKC 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00099 1139 SUPERFAMILY PYP-like sensor domain (PAS domain) 638 746 IPR035965 -
Pumo2g00099 1139 FunFam Phytochrome 421 551 - -
Pumo2g00099 1139 Gene3D PAS domain 778 888 - -
Pumo2g00099 1139 MobiDBLite consensus disorder prediction 1 29 - -
Pumo2g00099 1139 CDD PAS 776 884 IPR000014 -
Pumo2g00099 1139 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 238 406 IPR016132 -
Pumo2g00099 1139 ProSitePatterns Phytochrome chromophore attachment site signature. 338 347 IPR013516 -
Pumo2g00099 1139 Pfam PAS fold 634 749 IPR013767 GO:0006355
Pumo2g00099 1139 Pfam PAS fold 765 884 IPR013767 GO:0006355
Pumo2g00099 1139 SMART gaf_1 238 426 IPR003018 GO:0005515
Pumo2g00099 1139 Gene3D - 889 969 - -
Pumo2g00099 1139 CDD HisKA 906 962 IPR003661 GO:0000155|GO:0007165
Pumo2g00099 1139 Pfam His Kinase A (phospho-acceptor) domain 911 970 IPR003661 GO:0000155|GO:0007165
Pumo2g00099 1139 CDD PAS 642 749 IPR000014 -
Pumo2g00099 1139 ProSiteProfiles Histidine kinase domain profile. 913 1133 IPR005467 -
Pumo2g00099 1139 FunFam Phytochrome 778 886 - -
Pumo2g00099 1139 Pfam GAF domain 239 416 IPR003018 GO:0005515
Pumo2g00099 1139 Pfam Phytochrome region 429 602 IPR013515 GO:0006355|GO:0009584
Pumo2g00099 1139 Gene3D - 421 594 IPR043150 -
Pumo2g00099 1139 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1018 1127 IPR003594 -
Pumo2g00099 1139 ProSiteProfiles PAS repeat profile. 765 817 IPR000014 -
Pumo2g00099 1139 SMART HKATPase_4 1018 1131 IPR003594 -
Pumo2g00099 1139 SUPERFAMILY GAF domain-like 218 413 - -
Pumo2g00099 1139 SUPERFAMILY GAF domain-like 424 601 - -
Pumo2g00099 1139 FunFam Phytochrome 627 759 - -
Pumo2g00099 1139 NCBIfam PAS domain S-box protein 638 755 IPR000014 -
Pumo2g00099 1139 Gene3D PAS domain 629 754 - -
Pumo2g00099 1139 SUPERFAMILY PYP-like sensor domain (PAS domain) 91 206 IPR035965 -
Pumo2g00099 1139 CDD HATPase_Phy-like 1017 1129 IPR044767 -
Pumo2g00099 1139 Gene3D PAS domain 90 341 - -
Pumo2g00099 1139 PIRSF Phytochrome_conventional 17 1138 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Pumo2g00099 1139 FunFam Phytochrome 969 1135 - -
Pumo2g00099 1139 SMART HisKA_10 906 970 IPR003661 GO:0000155|GO:0007165
Pumo2g00099 1139 PANTHER TWO-COMPONENT HISTIDINE KINASE 867 1136 - -
Pumo2g00099 1139 SMART pas_2 633 700 IPR000014 -
Pumo2g00099 1139 SMART pas_2 764 834 IPR000014 -
Pumo2g00099 1139 Gene3D - 970 1135 IPR036890 -
Pumo2g00099 1139 SUPERFAMILY PYP-like sensor domain (PAS domain) 779 882 IPR035965 -
Pumo2g00099 1139 PRINTS Phytochrome signature 338 359 IPR001294 GO:0006355|GO:0009584
Pumo2g00099 1139 PRINTS Phytochrome signature 564 582 IPR001294 GO:0006355|GO:0009584
Pumo2g00099 1139 PRINTS Phytochrome signature 653 668 IPR001294 GO:0006355|GO:0009584
Pumo2g00099 1139 PRINTS Phytochrome signature 531 550 IPR001294 GO:0006355|GO:0009584
Pumo2g00099 1139 PRINTS Phytochrome signature 634 650 IPR001294 GO:0006355|GO:0009584
Pumo2g00099 1139 PRINTS Phytochrome signature 153 175 IPR001294 GO:0006355|GO:0009584
Pumo2g00099 1139 PRINTS Phytochrome signature 446 466 IPR001294 GO:0006355|GO:0009584
Pumo2g00099 1139 PRINTS Phytochrome signature 253 272 IPR001294 GO:0006355|GO:0009584
Pumo2g00099 1139 PRINTS Phytochrome signature 747 767 IPR001294 GO:0006355|GO:0009584
Pumo2g00099 1139 PRINTS Phytochrome signature 727 744 IPR001294 GO:0006355|GO:0009584
Pumo2g00099 1139 ProSiteProfiles PAS repeat profile. 631 702 IPR000014 -
Pumo2g00099 1139 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 981 1127 IPR036890 -
Pumo2g00099 1139 FunFam Phytochrome 887 968 - -
Pumo2g00099 1139 MobiDBLite consensus disorder prediction 1 35 - -
Pumo2g00099 1139 Pfam PAS fold 86 205 IPR013654 GO:0006355
Pumo2g00099 1139 Gene3D - 219 577 IPR029016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00099 Pumo-Chr2 2052723 2059445 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00099 2 1131 Histidine Kinase Gene Family AT4G16250 73.772 0.0 1757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00099 K12121 - gmx:100799831 2137.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00099 2 2052723 2059445 Pumo2g00099 2 2052723 2059445 ECH